RNA id: TU250661


Basic Information

Item Value
RNA id TU250661
length 543
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G220991
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6019321 ~ 6019978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTAGGTCCACAGTATGATGGTGGTACTTTGCTACACAGGTCCTCAAGGCCCAGTCTCTCTCCTTGGCTGATATCATATGAGCTGCGCGGGGCGCTCATGAGCCAGCTGTAGTCCACGCCGCTCTTCAGCCTTCGATATTCATTGTCTCGCTCCCGCTGCAGCCTCTCGGCCTCCTTCATCTGCCAGCTCAGTTCCAGCATCAGGGTTTCCATAACCACTTCAGAAGGCTCACGTCGTGGGCTCCGATAGTACGGCTCATTCCAGCTGAACCACGACATGCTCGCTCGTTTATCTGCCGCGGTCACCGGCCCTCTGCTGCTTTTACTTTTACCTGTAGGGGTGCAGTAAAAGTTGTCCTGGTTGCATACAACAAAGTGTAATTTATAATTTAAATATCTCTTTATGCTGTTATTGCCAAATATTGGATTACATTTTTTTTATCAACTTGTTTTCTTTCAGTTTTGAACTGGTTGATCAGAGGTCTCATTGAAAAAAATGAAATGAAAAAATAAAAGTTCATTTAAATGGTTAGTTCACCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250633 lncRNA upstream 3254 6015173 ~ 6016182 (+) True G220967
TU250649 lncRNA upstream 29322 5989806 ~ 5990114 (+) True G220983
TU250569 lncRNA upstream 73092 5945590 ~ 5946344 (+) True G220920
TU250572 lncRNA upstream 189330 5789528 ~ 5830106 (+) True G220923
TU250559 lncRNA upstream 274971 5741058 ~ 5744465 (+) True G220916
TU250663 lncRNA downstream 925 6020903 ~ 6021164 (+) True G220993
TU250662 lncRNA downstream 2969 6022947 ~ 6023186 (+) True G220992
TU250665 lncRNA downstream 3921 6023899 ~ 6024130 (+) True G220995
TU250666 lncRNA downstream 5755 6025733 ~ 6025954 (+) True G220996
TU250668 lncRNA downstream 6637 6026615 ~ 6026902 (+) True G220998
CI01000051_05996289_06007664.mRNA mRNA upstream 10878 5995995 ~ 6008558 (+) True CI01000051_05996289_06007664
CI01000051_05969849_05970699.mRNA mRNA upstream 47967 5969849 ~ 5971469 (+) True CI01000051_05969849_05970699
CI01000051_05955881_05966250.mRNA mRNA upstream 53011 5955417 ~ 5966425 (+) True CI01000051_05955881_05966250
CI01000051_05935542_05939529.mRNA mRNA upstream 79804 5935443 ~ 5939632 (+) True CI01000051_05935542_05939529
CI01000051_05831209_05933202.mRNA mRNA upstream 85799 5831209 ~ 5933637 (+) True CI01000051_05831209_05933202
CI01000051_06113450_06128623.mRNA mRNA downstream 93472 6113450 ~ 6129084 (+) True CI01000051_06113450_06128623
CI01000051_06136031_06140543.mRNA mRNA downstream 116053 6136031 ~ 6140633 (+) True CI01000051_06136031_06140543
CI01000051_06155906_06164505.mRNA mRNA downstream 135928 6155906 ~ 6164505 (+) True CI01000051_06155906_06164505
CI01000051_06167413_06171890.mRNA mRNA downstream 147225 6167203 ~ 6172507 (+) True CI01000051_06167413_06171890
CI01000051_06286985_06304439.mRNA mRNA downstream 267007 6286985 ~ 6304439 (+) True CI01000051_06286985_06304439
TU249310 other upstream 967403 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 969626 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 969626 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 969626 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 969626 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 805821 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1322063 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1389545 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2085665 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2322964 8342942 ~ 8343448 (+) True G222727

Expression Profile