RNA id: TU251618


Basic Information

Item Value
RNA id TU251618
length 281
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G221837
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6101722 ~ 6102002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTACCTTTATTCTACACCGCTATTTCCATTGTCATTTGTACGGCTGGATTGACTTCCTGATTCTATGATACCACTCCCTCTGAAATTGCAATGTGCTCAGATTGGTTAGCTGGCCCAGTGTATTGTGATTCGCTGAAGCGTCTGGAAACGCCACGCCCCTTACCATTAGTTGTTACATGTGCTTCAGTGGAAATGTAAATAATGGCGTCTATATTGCCGTATCAAATTGAGCCCGAATTAGACCCAGATAGCAGTAATGATGAAGAGGGTCAAGCAGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251617 lncRNA downstream 959 6100559 ~ 6100763 (-) True G221836
TU251611 lncRNA downstream 83752 6017633 ~ 6017970 (-) True G221830
TU251606 lncRNA downstream 114590 5984363 ~ 5987132 (-) True G221825
TU251603 lncRNA downstream 122726 5978741 ~ 5978996 (-) True G221822
TU251584 lncRNA downstream 153066 5948420 ~ 5948656 (-) True G221804
TU251639 lncRNA upstream 92658 6194660 ~ 6194895 (-) True G221858
TU251677 lncRNA upstream 294779 6396781 ~ 6396987 (-) True G221890
TU251841 lncRNA upstream 561606 6663608 ~ 6672624 (-) False G222054
TU251842 lncRNA upstream 561606 6663608 ~ 6689905 (-) True G222054
TU251843 lncRNA upstream 633152 6735154 ~ 6754268 (-) True G222055
CI01000051_06052696_06090422.mRNA mRNA downstream 11300 6051053 ~ 6090422 (-) True CI01000051_06052696_06090422
CI01000051_06041891_06047349.mRNA mRNA downstream 54012 6041619 ~ 6047710 (-) True CI01000051_06041891_06047349
CI01000051_06033224_06041180.mRNA mRNA downstream 60542 6033042 ~ 6041180 (-) True CI01000051_06033224_06041180
CI01000051_06015846_06019716.mRNA mRNA downstream 82006 6015707 ~ 6019716 (-) True CI01000051_06015846_06019716
CI01000051_05949486_05950751.mRNA mRNA downstream 150869 5949343 ~ 5950853 (-) True CI01000051_05949486_05950751
CI01000051_06175507_06185039.mRNA mRNA upstream 73477 6175479 ~ 6185039 (-) True CI01000051_06175507_06185039
CI01000051_06189714_06192740.mRNA mRNA upstream 87610 6189612 ~ 6192740 (-) True CI01000051_06189714_06192740
CI01000051_06201120_06284027.mRNA mRNA upstream 98457 6200459 ~ 6284784 (-) True CI01000051_06201120_06284027
CI01000051_06332084_06361639.mRNA mRNA upstream 229865 6331867 ~ 6361847 (-) True CI01000051_06332084_06361639
CI01000051_06366293_06372185.mRNA mRNA upstream 264116 6366118 ~ 6372185 (-) True CI01000051_06366293_06372185
TU251315 other downstream 582898 5513952 ~ 5518824 (-) True G221575
TU249582 other downstream 1943619 4155730 ~ 4158103 (-) True G220041
TU249434 other downstream 3140228 2961403 ~ 2961494 (-) True G219914
TU248216 other downstream 3261090 2840270 ~ 2840632 (-) True G218861
TU248069 other downstream 3555263 2527343 ~ 2546459 (-) True G218728
TU251621 other upstream 30771 6132773 ~ 6133579 (-) True G221840
TU252631 other upstream 2240147 8342149 ~ 8342652 (-) True G222729
TU252632 other upstream 2240968 8342970 ~ 8343438 (-) True G222730

Expression Profile