RNA id: TU250966


Basic Information

Item Value
RNA id TU250966
length 432
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G221254
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6947384 ~ 6947895 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATACTTTTGGTGAGAGAACACAAAATTTCTCAGGGGAACACAATACTTTGGCGAGAGAGGGCAAAATTTCTCAGGGGAACGCAATACTTTGGCGAGAGAGGGCAAAATTTCTCAGGGGAACGCAATACTTTGGCGAGAGAATGCAAAATTTCTTAGTGGAATTCAATACTTTTGGTGAGAGAACACAAAATTTCTCAGGGGAACGCAATACTTTGGCGAGAGAGGGCAAAATTTCTCAGGGGAACGCAATACTTTGGCAAGAGAATGCAAAATTTCTCAGTGGAATTCAATACTTTTGCGAGAGAAGGCAAAATTTCTAGGTGGAATGCAATATTTTGGCGAGAGAACACAACATTTCTCAGGGGAACACAATACTTTGGCGAGAGAGGGCAAAATTTCTCAGGGGAACAATACTTTGGCGAGAGAGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250906 lncRNA upstream 35673 6847641 ~ 6911711 (+) True G221208
TU250886 lncRNA upstream 150778 6794991 ~ 6796606 (+) True G221188
TU250892 lncRNA upstream 153448 6785486 ~ 6793936 (+) True G221194
TU250767 lncRNA upstream 216099 6729783 ~ 6729852 (+) True G221089
TU250741 lncRNA upstream 614895 6329977 ~ 6332489 (+) True G221065
TU250969 lncRNA downstream 95768 7043663 ~ 7152004 (+) False G221256
TU250968 lncRNA downstream 95836 7043731 ~ 7152004 (+) False G221256
TU250970 lncRNA downstream 95836 7043731 ~ 7152095 (+) True G221256
TU250996 lncRNA downstream 213271 7161166 ~ 7161367 (+) True G221280
TU250999 lncRNA downstream 259476 7207371 ~ 7207573 (+) True G221283
CI01000051_06917282_06944243.mRNA mRNA upstream 3117 6917282 ~ 6944267 (+) True CI01000051_06917282_06944243
CI01000051_06898228_06901582.mRNA mRNA upstream 45764 6898228 ~ 6901620 (+) True CI01000051_06898228_06901582
CI01000051_06887510_06888144.mRNA mRNA upstream 59205 6887158 ~ 6888179 (+) True CI01000051_06887510_06888144
CI01000051_06825895_06830637.mRNA mRNA upstream 116747 6825895 ~ 6830637 (+) False CI01000051_06825895_06830637
CI01000051_06655818_06730954.mRNA mRNA upstream 216346 6655818 ~ 6731038 (+) False CI01000051_06655818_06730954
CI01000051_06948569_06952962.mRNA mRNA downstream 674 6948569 ~ 6954096 (+) True CI01000051_06948569_06952962
CI01000051_06970612_06971675.mRNA mRNA downstream 22527 6970422 ~ 6971842 (+) True CI01000051_06970612_06971675
CI01000051_06985393_07011299.mRNA mRNA downstream 35459 6983354 ~ 7011403 (+) True CI01000051_06985393_07011299
CI01000051_07015896_07020569.mRNA mRNA downstream 67488 7015383 ~ 7020614 (+) True CI01000051_07015896_07020569
CI01000051_07081085_07109551.mRNA mRNA downstream 133190 7081085 ~ 7109606 (+) True CI01000051_07081085_07109551
TU250885 other upstream 114316 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 1895351 5018305 ~ 5052033 (+) False G219803
TU249297 other upstream 1897574 4944958 ~ 5049810 (+) False G219803
TU251039 other downstream 394146 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 461628 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 1157748 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 1395047 8342942 ~ 8343448 (+) True G222727

Expression Profile