RNA id: TU251080


Basic Information

Item Value
RNA id TU251080
length 329
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G221360
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7248170 ~ 7248498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAATTGTAAATAGGTTAACAGTAAGTTCCAGTACTATATACAGGGAAAAACTGTAAAAGCTCTTACCAGACATTTTATGTAATTTTCACAGTAAAATGCTGTAAATTTTACAATTTGTAGAAGTAAAAAAGAACAAATCAATGTATAATTTACAGTCAAAAACTGTAGATATTCCCACAATTCCCTGTGTGACACTCCACATTTGAAAGTATTTTGTTTAAAAAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATGTACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATGTAAGTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251073 lncRNA upstream 23003 7224890 ~ 7225167 (+) True G221353
TU251071 lncRNA upstream 25183 7222717 ~ 7222987 (+) True G221351
TU251008 lncRNA upstream 32591 7215363 ~ 7215579 (+) True CI01000051_07215332_07217167
TU250999 lncRNA upstream 40597 7207371 ~ 7207573 (+) True G221283
TU250996 lncRNA upstream 86803 7161166 ~ 7161367 (+) True G221280
TU251036 lncRNA downstream 36489 7284987 ~ 7285294 (+) True G221316
TU251085 lncRNA downstream 36998 7285496 ~ 7285769 (+) True G221365
TU251067 lncRNA downstream 37889 7286387 ~ 7286655 (+) True G221347
TU251031 lncRNA downstream 43741 7292239 ~ 7293753 (+) True G221311
TU251098 lncRNA downstream 83159 7331657 ~ 7331868 (+) True G221378
CI01000051_07215332_07217167.mRNA mRNA upstream 30462 7215332 ~ 7217708 (+) False CI01000051_07215332_07217167
CI01000051_07170752_07194524.mRNA mRNA upstream 53646 7170752 ~ 7194524 (+) True CI01000051_07170752_07194524
CI01000051_07125875_07127476.mRNA mRNA upstream 120323 7125875 ~ 7127847 (+) True CI01000051_07125875_07127476
CI01000051_07081085_07109551.mRNA mRNA upstream 138564 7081085 ~ 7109606 (+) True CI01000051_07081085_07109551
CI01000051_07015896_07020569.mRNA mRNA upstream 227556 7015383 ~ 7020614 (+) True CI01000051_07015896_07020569
CI01000051_07253002_07255432.mRNA mRNA downstream 3703 7252201 ~ 7255620 (+) True CI01000051_07253002_07255432
CI01000051_07259968_07261598.mRNA mRNA downstream 11220 7259718 ~ 7261731 (+) True CI01000051_07259968_07261598
CI01000051_07267084_07283654.mRNA mRNA downstream 18513 7267011 ~ 7284015 (+) True CI01000051_07267084_07283654
CI01000051_07287140_07287867.mRNA mRNA downstream 38642 7287140 ~ 7288035 (+) True CI01000051_07287140_07287867
CI01000051_07337005_07340657.mRNA mRNA downstream 88355 7336853 ~ 7340692 (+) True CI01000051_07337005_07340657
TU250885 other upstream 415102 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2196137 5018305 ~ 5052033 (+) False G219803
TU249297 other upstream 2198360 4944958 ~ 5049810 (+) False G219803
TU251039 other downstream 93543 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 161025 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 857145 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 1094444 8342942 ~ 8343448 (+) True G222727

Expression Profile