RNA id: TU252193


Basic Information

Item Value
RNA id TU252193
length 421
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G222356
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7342108 ~ 7342528 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATCTCTGGAGCTCAGCCACAGTGATCTTTGGGTTCTTCTTTACCTCTCTCACCAAGGCTCTTCTCCCCCGATAGCTCAGTTTGGCCGGACGGCCAGCTCTAGGAAGGGTTCTGGTCGTCCCAAACATCTTCCATTTAAGGATTATGGAGGCCACTGTGCTCTTAGGAACCTTAAGTGCAGCAGAAATTTTTTTGTAACCTTGGCCAGATCTGTGCCTTGCCACAATTCTGTCTCTGAGCTCTTCAGGCAGTTCCTTTGACCTCATGATTCTCATTTGCTCTGACATGCACTGTGAGCTGTAAGATCTTATATAGACAGGTGTGTGGCTTTCCTAATCAAGTCCAATCAGTATAATCAAACACAGCTGGACTCAAATGAAGGTGTAGAACCATCTCAAGGATGATCAGAAGAAATGGACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252192 lncRNA downstream 9593 7332298 ~ 7332515 (-) True G222355
TU252190 lncRNA downstream 46475 7294307 ~ 7295633 (-) True G222353
TU252111 lncRNA downstream 169237 7170192 ~ 7172871 (-) True G222295
TU252120 lncRNA downstream 171031 7162053 ~ 7171077 (-) False G222295
TU252051 lncRNA downstream 229211 7111614 ~ 7112897 (-) True G222243
TU252198 lncRNA upstream 13575 7356103 ~ 7356312 (-) True G222361
TU252200 lncRNA upstream 14621 7357149 ~ 7357385 (-) True G222363
TU252074 lncRNA upstream 24364 7366892 ~ 7371000 (-) True G222262
TU252207 lncRNA upstream 33190 7375718 ~ 7375990 (-) True G222370
TU252215 lncRNA upstream 115714 7458242 ~ 7458443 (-) True G222378
CI01000051_07288569_07296096.mRNA mRNA downstream 46012 7288085 ~ 7296096 (-) True CI01000051_07288569_07296096
CI01000051_07218226_07226180.mRNA mRNA downstream 115382 7218142 ~ 7226726 (-) True CI01000051_07218226_07226180
CI01000051_06966165_06969998.mRNA mRNA downstream 371891 6966093 ~ 6970217 (-) True CI01000051_06966165_06969998
CI01000051_06958650_06963551.mRNA mRNA downstream 378287 6958572 ~ 6963821 (-) True CI01000051_06958650_06963551
CI01000051_06910132_06916487.mRNA mRNA downstream 425621 6909440 ~ 6916487 (-) True CI01000051_06910132_06916487
CI01000051_07403086_07404051.mRNA mRNA upstream 59539 7402067 ~ 7404784 (-) True CI01000051_07403086_07404051
CI01000051_07410144_07439528.mRNA mRNA upstream 66935 7409463 ~ 7439528 (-) True CI01000051_07410144_07439528
CI01000051_07580256_07582183.mRNA mRNA upstream 237713 7580241 ~ 7582183 (-) True CI01000051_07580256_07582183
CI01000051_07584669_07585335.mRNA mRNA upstream 241827 7584355 ~ 7585335 (-) True CI01000051_07584669_07585335
CI01000051_07618053_07621854.mRNA mRNA upstream 275514 7618042 ~ 7621854 (-) True CI01000051_07618053_07621854
TU251621 other downstream 1208529 6132773 ~ 6133579 (-) True G221840
TU251315 other downstream 1823284 5513952 ~ 5518824 (-) True G221575
TU249582 other downstream 3184005 4155730 ~ 4158103 (-) True G220041
TU249434 other downstream 4380614 2961403 ~ 2961494 (-) True G219914
TU248216 other downstream 4501476 2840270 ~ 2840632 (-) True G218861
TU252631 other upstream 999621 8342149 ~ 8342652 (-) True G222729
TU252632 other upstream 1000442 8342970 ~ 8343438 (-) True G222730

Expression Profile