RNA id: TU251115


Basic Information

Item Value
RNA id TU251115
length 233
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G221393
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7375973 ~ 7376205 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCACACTGCCTTCGCCGGCTTGCCTTCTTCCCATAGTGCATCCTGGTGCCATGTGTTCCCCAGGTAAGCGACGCACATGCACCCAAACTGTTCCAGTTCTGATTCTCACGTGCCCACTGTTGGTGCTTTCAGCGATGGACAGGGGTCAGCATGGGCACCCTGACTGGTCTGCGGCTATGCAGCTCCATATGCAACAAACTGAGATACACTGTCTATTCTGACACCTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251105 lncRNA upstream 2239 7373383 ~ 7373734 (+) True G221385
TU251098 lncRNA upstream 44105 7331657 ~ 7331868 (+) True G221378
TU251031 lncRNA upstream 82220 7292239 ~ 7293753 (+) True G221311
TU251067 lncRNA upstream 89318 7286387 ~ 7286655 (+) True G221347
TU251085 lncRNA upstream 90204 7285496 ~ 7285769 (+) True G221365
TU251106 lncRNA downstream 24970 7401175 ~ 7411152 (+) False G221386
TU251107 lncRNA downstream 32957 7409162 ~ 7413007 (+) False G221386
TU251056 lncRNA downstream 46718 7422923 ~ 7425419 (+) True G221336
TU251128 lncRNA downstream 74274 7450479 ~ 7450890 (+) False G221406
TU251129 lncRNA downstream 74274 7450479 ~ 7450755 (+) False G221406
CI01000051_07367270_07370738.mRNA mRNA upstream 5095 7366852 ~ 7370878 (+) True CI01000051_07367270_07370738
CI01000051_07345863_07353841.mRNA mRNA upstream 20853 7345863 ~ 7355120 (+) True CI01000051_07345863_07353841
CI01000051_07337005_07340657.mRNA mRNA upstream 35281 7336853 ~ 7340692 (+) True CI01000051_07337005_07340657
CI01000051_07287140_07287867.mRNA mRNA upstream 87938 7287140 ~ 7288035 (+) True CI01000051_07287140_07287867
CI01000051_07267084_07283654.mRNA mRNA upstream 91958 7267011 ~ 7284015 (+) True CI01000051_07267084_07283654
CI01000051_07378590_07389158.mRNA mRNA downstream 2385 7378590 ~ 7389570 (+) True CI01000051_07378590_07389158
CI01000051_07391277_07399712.mRNA mRNA downstream 14429 7390634 ~ 7399786 (+) True CI01000051_07391277_07399712
CI01000051_07470914_07489207.mRNA mRNA downstream 94709 7470914 ~ 7489242 (+) True CI01000051_07470914_07489207
CI01000051_07507549_07530087.mRNA mRNA downstream 131344 7507549 ~ 7530087 (+) True CI01000051_07507549_07530087
CI01000051_07534938_07540104.mRNA mRNA downstream 156434 7532639 ~ 7540418 (+) True CI01000051_07534938_07540104
TU251039 other upstream 33427 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 542905 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2323940 5018305 ~ 5052033 (+) False G219803
TU249302 other upstream 2326163 4959429 ~ 5049810 (+) False G219803
TU251108 other downstream 33318 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 729438 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 966737 8342942 ~ 8343448 (+) True G222727

Expression Profile