RNA id: TU252527


Basic Information

Item Value
RNA id TU252527
length 242
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G222653
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 8243364 ~ 8243605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTATTTTATCTTATAGAAAATAACTGTGACGTTTCCACGCAATAAAAACATTTTATTGCAACAATAGTGACCACGCAATGACCTGGCAGCTTTATCAATGGCTTGAGCAGTGTGACTCAGGACTATTGCTATTATAATAGAGAGCTGTCATCTGCTCATGTGAACAACAGTGGCCGTCCTGAGGAGAGCTCAAATGTGGGCTGCTCAAAAAAAATGTGCCAATGAGAGCTACGGACGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252519 lncRNA upstream 9362 8233470 ~ 8234002 (+) True G222645
TU252516 lncRNA upstream 10480 8232666 ~ 8232884 (+) True G222642
TU252505 lncRNA upstream 19084 8223950 ~ 8224280 (+) True G222631
TU251290 lncRNA upstream 201510 8041617 ~ 8041854 (+) True G221552
TU251277 lncRNA upstream 226829 8016244 ~ 8016535 (+) True G221539
TU252530 lncRNA downstream 2935 8246540 ~ 8246748 (+) True G222656
TU252534 lncRNA downstream 9916 8253521 ~ 8253956 (+) True G222660
TU252595 lncRNA downstream 86935 8330540 ~ 8330770 (+) True G222716
TU252597 lncRNA downstream 91603 8335208 ~ 8335484 (+) False G222718
TU252606 lncRNA downstream 91603 8335208 ~ 8335670 (+) True G222718
CI01000051_08211233_08214513.mRNA mRNA upstream 28668 8209722 ~ 8214696 (+) False CI01000051_08211233_08214513
CI01000051_08171018_08172280.mRNA mRNA upstream 70820 8171018 ~ 8172544 (+) True CI01000051_08171018_08172280
CI01000051_08046197_08069874.mRNA mRNA upstream 173447 8045895 ~ 8069917 (+) True CI01000051_08046197_08069874
CI01000051_07978982_07979269.mRNA mRNA upstream 264061 7978390 ~ 7979303 (+) True CI01000051_07978982_07979269
CI01000051_07963621_07976671.mRNA mRNA upstream 265155 7963621 ~ 7978209 (+) True CI01000051_07963621_07976671
CI01000051_08381644_08388611.mRNA mRNA downstream 137986 8381591 ~ 8389116 (+) True CI01000051_08381644_08388611
CI01000051_08425890_08429863.mRNA mRNA downstream 181092 8424697 ~ 8429965 (+) True CI01000051_08425890_08429863
TU251044 other upstream 29093 8105643 ~ 8128075 (+) True G221324
TU251108 other upstream 830357 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 900818 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 1410296 6825799 ~ 6833068 (+) True G221187
TU249300 other upstream 3193554 5045115 ~ 5049810 (+) False G219803
TU252626 other downstream 99337 8342942 ~ 8343448 (+) True G222727

Expression Profile