RNA id: TU254788


Basic Information

Item Value
RNA id TU254788
length 283
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G224639
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2970718 ~ 2971283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGACAAACAAGCGTAATCACAATAATTTATTTTTTGCGAAAATGTCAAAAGTGGTACCAAAAGTAGTTCAAATGATGATGAGTTCCAGTCACAGTCCTCTCTGGCGGTAATAGTTTTTTATAGGGTACAGAGCAGAATTTAATTTATTAATCCATGAAAATATGATAAATCCGGCTTCTCTCCGTGAAGGCGCGACACTCATTTCAAATGTCAATCCACTGAAACACGGCATGTCGCAATCTGTGACGAAGCAGGTGAGAACCAATGAGCGTTCGATATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254778 lncRNA upstream 16805 2953712 ~ 2953913 (+) True G224630
TU254777 lncRNA upstream 17504 2952908 ~ 2953214 (+) True G224629
TU254754 lncRNA upstream 50996 2919482 ~ 2919722 (+) True G224606
TU254079 lncRNA upstream 111366 2859121 ~ 2859352 (+) True G224005
TU254073 lncRNA upstream 140171 2830342 ~ 2830547 (+) True G224000
TU254845 lncRNA downstream 74387 3045670 ~ 3046042 (+) True G224696
TU254893 lncRNA downstream 212014 3183297 ~ 3185834 (+) True G224741
TU254987 lncRNA downstream 224816 3196099 ~ 3196309 (+) True G224820
TU255019 lncRNA downstream 262198 3233481 ~ 3233684 (+) True G224852
TU255030 lncRNA downstream 277450 3248733 ~ 3249058 (+) True G224863
CI01000052_02850485_02858740.mRNA mRNA upstream 111857 2850355 ~ 2858861 (+) True CI01000052_02850485_02858740
CI01000052_02845585_02849894.mRNA mRNA upstream 120740 2845550 ~ 2849978 (+) True CI01000052_02845585_02849894
CI01000052_02646977_02647792.mRNA mRNA upstream 322894 2646223 ~ 2647824 (+) True CI01000052_02646977_02647792
CI01000052_02622010_02627854.mRNA mRNA upstream 342408 2620241 ~ 2628310 (+) False CI01000052_02622010_02627854
CI01000052_02597704_02601005.mRNA mRNA upstream 368866 2597556 ~ 2601852 (+) True CI01000052_02597704_02601005
CI01000052_03401048_03405703.mRNA mRNA downstream 428987 3400270 ~ 3406312 (+) True CI01000052_03401048_03405703
CI01000052_03453140_03462799.mRNA mRNA downstream 481669 3452952 ~ 3462799 (+) True CI01000052_03453140_03462799
CI01000052_03484560_03485959.mRNA mRNA downstream 513277 3484560 ~ 3486253 (+) True CI01000052_03484560_03485959
CI01000052_03490583_03492859.mRNA mRNA downstream 518864 3490147 ~ 3492859 (+) True CI01000052_03490583_03492859
TU253739 other upstream 866419 2049326 ~ 2104299 (+) False G223694
TU253734 other upstream 866419 2098540 ~ 2104299 (+) False G223694
TU253572 other upstream 1699791 1270492 ~ 1270927 (+) True G223545
TU255127 other downstream 459853 3431136 ~ 3460136 (+) True G224953

Expression Profile