RNA id: CI01000053_00696659_00703507.mRNA


Basic Information

Item Value
RNA id CI01000053_00696659_00703507.mRNA
length 1661
RNA type mRNA
GC content 0.43
exon number 11
gene id CI01000053_00696659_00703507
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 696362 ~ 703507 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGTGGCTTGGAAACTGTCACTGGAAAGTATGGAGACACTGTTGAAATCCCATGCAACAATGGACGCGTCACAGAAGAGGCTGTCACGTTTGTTAAATGGAAATATAACAACGATGGCAACATTCTGGTGAAACAAACGGGTCAGAATGCCACTATTTCAAACGATGTGAACTACAAGAACAGAGTCGGTATCAAAAAAGACTTCAGCCTCATCATCAGACAAGTGACCATGGCAGATCAGAAGACCTTCACCTGCATGGTGGTGGGGAAAGAAGACATTTTTGAGTATCCCATTCAACTGGTCATTTACAAGGTTCCATCTCAACCTCAGATTACAAATCAAACGACTACGATGGCAGTTGGCAAACTAACTAAGTTAGCGCAGTGTCGTACTGAAGGTGCCAATCCAGCTGCCAACATCACATGGTTCAAGAACAATACTCCACTTATGGCTGATGGCGCAGCAATTAAAATCACTGCAGCTGTGGTTGTTGATAAAGAGACGGGACTATCTGCAACAACTTCTGACCTTGAGTATACAGCAGTGAAGGGAGACATTGATGCCAGTTTCACTTGTCAGGTTCAACACATCCGATCAGCTAACATGGATTCCTCCCCTCTTATCTTCACTGTGAACTACCCTACCGAGAAGGTCAGTCTCCAAGTGGTGTCCCAGGGTTCTTTTAAGGAAGGGGACAACGTGACCCTCAAATGCACGGCAGACGGAAACCCTCCACCTTCTAGCTACATCTTCTACGTGAAGGGAGAGAAAAAGAAAGTGGAGAACTCCAACACATACACCTTAACCAATGTCACCCGGGCAAACACTGGAGAATACAAATGTTCACTGGTGGACAATGAGGATATGGGGGATTCTGTATCCATCAAAGTTGAATATCTTGATGTGGCTCTTAGCACCGCTGGTCAAATTTCCAAGAGACTTGGCGAGAGCTTTGAGGTAACCGCAGACATTGAAGCTTCAGGAAAAACACAAACATCTTGGAGAAAGGGCAGTATCATGCTGAATGGCCAGCCCAAGTTCGACAAGTTGAAGTACTCAGACTCTGGTGTTTATGTGTGTGATGTTTCCATGGCTGGCCTCAAGAAGACAAAAACATTTGAATTAATAGTTCAAGGTTCTCCAGTGATCAAGAACCTGAACAAGAAGCGTCATGATGCAAGCAAGAACAAGGTCCTGATTTGTGAGGCTGAAGGCTTTCCAAAACCCACAGTACAGTGGAGTGTCAATGGCACAAATCCTTCTTGGTCTCATCCTATTACCTATTACTACAGTTACCAAAGGACTTTCTTTGGCTTAATAAGTATCTTTTTTATTATTAACCTGAAACTGAGCCTTCCTTAAAGCGTTTATGACATTTCTGAGCATCCGAGCTCTTTTAGAATTCATCTTCCAGGGTTTATTGCTGCTTTCAACAGTGAAAGAACCTGAAAAGAGTTAAACATCTTATTTTGAACAAGCTAGCAGCACATTTTTGAACTGATAAAGATGTTCTCACAGCAGTAACAATGGGACAGAATGTATTTTGTTAAACAAAGCAGTCATAGTACCCATATCAGTAAGCATTAGGGTAAGGTCACTGTTCAGGCACACCAGGCAACTAGTGTGCCTGAGTGGGTGTTTACAGAGGAAGCAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255941 lncRNA downstream 125105 571056 ~ 571257 (-) True G225622
TU255939 lncRNA downstream 140303 552476 ~ 556059 (-) True G225620
TU255884 lncRNA downstream 168832 526117 ~ 527530 (-) True G225570
TU255885 lncRNA downstream 170417 524494 ~ 525945 (-) True G225571
TU255925 lncRNA downstream 203073 493053 ~ 493289 (-) True G225606
TU255990 lncRNA upstream 43874 747381 ~ 747619 (-) True G225665
TU255993 lncRNA upstream 45744 749251 ~ 749495 (-) True G225668
TU255876 lncRNA upstream 104660 808167 ~ 809734 (-) True G225563
TU255872 lncRNA upstream 110121 813628 ~ 814240 (-) True G225561
TU256003 lncRNA upstream 112897 816404 ~ 816668 (-) True G225678
CI01000053_00678066_00685960.mRNA mRNA downstream 8556 677932 ~ 687806 (-) True CI01000053_00678066_00685960
CI01000053_00667421_00672829.mRNA mRNA downstream 21941 667075 ~ 674421 (-) True CI01000053_00667421_00672829
CI01000053_00656235_00664346.mRNA mRNA downstream 32016 655451 ~ 664346 (-) True CI01000053_00656235_00664346
CI01000053_00647818_00652652.mRNA mRNA downstream 43643 647708 ~ 652719 (-) True CI01000053_00647818_00652652
CI01000053_00629840_00639156.mRNA mRNA downstream 57191 629713 ~ 639171 (-) True CI01000053_00629840_00639156
CI01000053_00733357_00737206.mRNA mRNA upstream 29808 733315 ~ 737327 (-) True CI01000053_00733357_00737206
CI01000053_00739813_00746803.mRNA mRNA upstream 36155 739662 ~ 747031 (-) True CI01000053_00739813_00746803
CI01000053_00797990_00802827.mRNA mRNA upstream 94200 797707 ~ 803060 (-) True CI01000053_00797990_00802827
CI01000053_00815725_00817893.mRNA mRNA upstream 112090 815597 ~ 817893 (-) True CI01000053_00815725_00817893
CI01000053_00830433_00864331.mRNA mRNA upstream 126691 830198 ~ 864373 (-) True CI01000053_00830433_00864331
TU255892 other downstream 149494 543647 ~ 546868 (-) True G225574
TU256158 other upstream 756088 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1513941 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1862385 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2293210 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2846826 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016890 True 3078 mRNA 0.42 16 NC_007126.7 19838458 ~ 19878987 (+)