RNA id: CI01000053_01629699_01639689.mRNA



Basic Information


Item Value
RNA id CI01000053_01629699_01639689.mRNA
length 1726
RNA type mRNA
GC content 0.42
exon number 9
gene id CI01000053_01629699_01639689
representative True

Chromosome Information


Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1629286 ~ 1639763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTCATTGTGTTGAGAAAGGCAGAGGCTTGGTTACAAGCTAATAACCGGCAGACCACCTGCACAGAGAAAACACATGGGCAAAGGTCACCAGAACACCATCAAAGGCCTCTGTGTGCATGCTCATGTCAACGTCAGTGAAATATATAACCCTGAGATAAGAATCCAAGAGCAAAAAAAGAGCTGTATTGTTGACAACCAGCCAGAGAAGGGGGCTGCAAAGGGCAGGGGCTCAAGTGAACACAATATTCCAACAGGCACTTGCTCAAATGTTCCGTTGACTTTGGCTGTTTGTTTCCTAAAGACACTGGGCTCAACAGGCATTCCAGTACAGCCGGCACAAAGAGCTCTTTTCACCGTGTTTAATCCTTGCAGAGGAGTGGCGAAGGGGCCTGGCTCTCCTCCACTGAGGACCACAAGACCCGAACTCCAAATTCATAGACAAGCACCCACACAGACCAAAAAAGCATGCAGAAAAGCCCTGTTTAACAGAGTGCGGCAAGCATCGTCAATGCCTTCGGTGCCAGTGAGCGACCCTCAACGCCTTGGCAAAACTCCTCAGACCATCTCTTTAATCTCCATTCAAAAATGTGAGAAGCTCAAAGCCAAGAATTTCACCTCAGCTGGAAAGTGGCTAGCACACAGGGACTCAAAGCCACAGAAGGAGAATGACACTCAGAAAAAGATGGAATACACTATACAACTAGCTGCTGAAAGCCCAAGCCAAGATATTGGACATGATCATGGAAAGGCCCCACACTCCCCCTCTGCCTGTTTCTCTGTACTGGCTCAATGGGCTGCTCTGTTTTGGGTGGGAGATCAGGAGGAGAGAGAACTACTAACGTGGCACTTCCAGTGTGGTGCCTCTGGTCTCTTTCCATCTGTCCTCCTCTCAGTAAATGAAAGCCTTCCTGTTCTGTCAACCACTCCTAGCCTGACACAAGGCACTCATTCTTTCAGTCAAAGAACTCCTCACTTGTTCACTAACCTTGCAGAGACCCCTGCTGCAAAAGGTTCCTTGGGAAGGTGCCAGAGCACTGGAGACCTGAGGAAATTCCTCATGCTCACTCAGAATGCATCTAATTTCCTCCTGTGTGTCTCACATGTTAAAGGTCCAGCTCAAAGGCTTGTCACTACAGTGGGGGAAAAACAGGGCAGCTGGAGGGTCTATGACAGCCCCACCCTAAAACTTTCCTTGTGGATTAGAGTCAACATCAAACAGAGACAGATTCTATCAGATAAGACCTTGTTTCACATACAGATCATCCCCTGTAGATATGGGTCACAAACTTCAGACTTCAGCTGTGGTCAATGACTATGAATTTGACATTTAGTAAAATATGCAGTCATAAATTTATGATAGTCAACAAGGAAAGACTTTATTGCTTTTAGAATTGTCTTTAAACGTATAAAGAACAGTTTACCCGTCGTTTTCACCTATATTAAAATTCTATTGTAAAGTTTTGATAAATAACCGATATTAAAATTCTCTACTATTTTGTCTATATAAATTAGAAATTAAACAATTCTACAAGGTAGTGTCACAACCAGTATTATACTAGTATTATTGGTATATTATTACAGTATTTTTTAATTAGCTTTTTTTTTGTAGTTTTTTTTTTATTATTATATTGTTTTCTATTTAACTCTATTTTTATTTCAGTTTTTAGTATTTTTAGTTTGACTGCTTATACCTCTCAATACTCAGTTTCCTCCAAAAGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257023 lncRNA downstream 6468 1619936 ~ 1622818 (-) True G226513
TU256244 lncRNA downstream 79427 1549507 ~ 1549859 (-) True G225888
TU256240 lncRNA downstream 84099 1544851 ~ 1545187 (-) True G225886
TU256233 lncRNA downstream 85544 1543528 ~ 1543742 (-) True G225884
TU256155 lncRNA downstream 98284 1529142 ~ 1531002 (-) True G225809
TU257126 lncRNA upstream 102697 1742460 ~ 1742765 (-) True G226606
TU257129 lncRNA upstream 108117 1747880 ~ 1748087 (-) True G226609
TU257134 lncRNA upstream 136687 1776450 ~ 1776658 (-) True G226614
TU257069 lncRNA upstream 290076 1929839 ~ 1931337 (-) True G226553
TU257058 lncRNA upstream 291785 1931548 ~ 1931880 (-) True G226542
CI01000053_01603290_01609575.mRNA mRNA downstream 19711 1602928 ~ 1609575 (-) True CI01000053_01603290_01609575
CI01000053_01166907_01193322.mRNA mRNA downstream 435964 1166476 ~ 1193322 (-) True CI01000053_01166907_01193322
CI01000053_01124489_01129327.mRNA mRNA downstream 499927 1123759 ~ 1129359 (-) True CI01000053_01124489_01129327
CI01000053_01063383_01064712.mRNA mRNA downstream 563570 1063229 ~ 1065716 (-) False CI01000053_01063383_01064712
CI01000053_00974193_00978185.mRNA mRNA downstream 651101 973261 ~ 978185 (-) True CI01000053_00974193_00978185
CI01000053_01655618_01660681.mRNA mRNA upstream 15785 1655548 ~ 1660737 (-) True CI01000053_01655618_01660681
CI01000053_01720326_01736077.mRNA mRNA upstream 80535 1720298 ~ 1736077 (-) True CI01000053_01720326_01736077
CI01000053_01759982_01765920.mRNA mRNA upstream 118922 1758685 ~ 1766084 (-) True CI01000053_01759982_01765920
CI01000053_01819436_01827270.mRNA mRNA upstream 179224 1818987 ~ 1828591 (-) True CI01000053_01819436_01827270
CI01000053_01847036_01856935.mRNA mRNA upstream 205963 1845726 ~ 1857230 (-) True CI01000053_01847036_01856935
TU256158 other downstream 162554 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1082418 543647 ~ 546868 (-) True G225574
TU257051 other upstream 577685 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 926129 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 1356954 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1910570 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1910896 3552883 ~ 3552971 (-) True G227041

Expression Profile