RNA id: CI01000053_03551506_03551965.mRNA


Basic Information

Item Value
RNA id CI01000053_03551506_03551965.mRNA
length 731
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000053_03551506_03551965
representative False

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3550333 ~ 3552847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCGTTCTCATGTAATCATAATTTCAGACTTTCTGATAGGCTAATAATAGTTTGATTTCTTTCTAAAAAAAAAAAAAAATAATAAAAAACATCTGATCGATCATTTTGCTAGTTTGATTTTCAAGATATAAAGATACTAATCTGACTGTCAGTGAACAGTTTCAGTTTGTTTTCTGTCATGTGACCTTTTCTTTTAAACTGAGTCGATGCCAGTCTGGCTCTGAATTCAGTATGGGTTGCAAGTGTTTGTTGGCTCGGTGTAAGAATTTGACAGGTTGGCACTGGTTCCCCCGCGATGCTGACAGAGCTAGATTGTGGCTGCAGGCGTTGGGATCCCCATCAACTCCCGACACATCAAGATTGTTTGTGTGTAACAAGCATTTTTCACGGGAGAGCTTTTATAGACATGAGGACTTTGGCATTGCTCATGGAGGTAATCTCAGAGGAGAAGACACTGAACAAAGTCTCAAATACCTTTCCATCGCTACAGGGCAGCCGCTGCTGGCTGGAAATATTGGAATTTTGCCCAGTGACTACAGCTGAAGGAGGAAGTCCAAATATGGTCATTGGTGAGATGAATTTATCATGAAGTCCAACAACAAGCAGCCATGCTTCTGGGTTCTTCACACAGTTGGATCAGAAATGGCTATTCAGAGTAAATGTAGTTCTAATCACTGTTTTAGTTATGTGAAACATTATGTAATGTAACGTTTTTTGTTAACGTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257629 lncRNA downstream 4177 3484863 ~ 3547141 (-) True G227047
TU257863 lncRNA downstream 9996 3540756 ~ 3541322 (-) True G227225
TU257638 lncRNA downstream 60409 3395768 ~ 3490909 (-) True G227049
TU257802 lncRNA downstream 122996 3405148 ~ 3428322 (-) True G227174
TU257815 lncRNA downstream 130502 3413501 ~ 3420816 (-) True G227184
TU257666 lncRNA upstream 51702 3603898 ~ 3606489 (-) True G227069
TU257626 lncRNA upstream 65412 3617608 ~ 3620177 (-) True G227046
TU257874 lncRNA upstream 83521 3635717 ~ 3636139 (-) False G227236
TU257876 lncRNA upstream 83521 3635717 ~ 3636283 (-) True G227236
TU257641 lncRNA upstream 154343 3706539 ~ 3707610 (-) True G227051
CI01000053_03499011_03502122.mRNA mRNA downstream 49055 3498398 ~ 3502263 (-) True CI01000053_03499011_03502122
CI01000053_03456147_03457909.mRNA mRNA downstream 93119 3456035 ~ 3458199 (-) True CI01000053_03456147_03457909
CI01000053_03403259_03403534.mRNA mRNA downstream 147289 3403037 ~ 3404029 (-) True CI01000053_03403259_03403534
CI01000053_03304977_03312227.mRNA mRNA downstream 238679 3304374 ~ 3312639 (-) True CI01000053_03304977_03312227
CI01000053_03142995_03145565.mRNA mRNA downstream 405753 3142995 ~ 3145565 (-) True CI01000053_03142995_03145565
CI01000053_03558891_03566444.mRNA mRNA upstream 6587 3558783 ~ 3569352 (-) True CI01000053_03558891_03566444
CI01000053_03592810_03602102.mRNA mRNA upstream 40459 3592655 ~ 3602437 (-) True CI01000053_03592810_03602102
CI01000053_03620673_03622682.mRNA mRNA upstream 68044 3620240 ~ 3622685 (-) True CI01000053_03620673_03622682
CI01000053_03625343_03653163.mRNA mRNA upstream 72774 3624970 ~ 3653334 (-) True CI01000053_03625343_03653163
CI01000053_03665103_03666630.mRNA mRNA upstream 112394 3664590 ~ 3667700 (-) True CI01000053_03665103_03666630
TU257528 other downstream 554050 2996717 ~ 2997268 (-) True G226963
TU257358 other downstream 984246 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 1313922 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 2084586 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 3004450 543647 ~ 546868 (-) True G225574
TU258305 other upstream 535041 4087237 ~ 4087740 (-) True G227604
TU259481 other upstream 2232287 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 2379396 5931592 ~ 5932241 (-) True G228750

Expression Profile