RNA id: CI01000053_05296599_05301528.mRNA


Basic Information

Item Value
RNA id CI01000053_05296599_05301528.mRNA
length 704
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000053_05296599_05301528
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5296555 ~ 5301735 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAATAATCGTCTTCAAACACCTGTTCATCTGGTCTTCACCATGAACACCTTTCTGTCTCTCGTGGTCCTGAGTGTGAGTCTGCCCACCTTGCTGGCTCTAGACTACCGTGCGGTGTGGCAGTTCAGGTCCATGATCATCTGTACCGTCCCTGGTAGCTGGCCTGCACTGGATTACGCAGACTACGGATGCTACTGCGGCCTGGGAGGCTCAGGCACCCCGGTGGATGCACTGGACAGGTGCTGTCAGGTGCATGATCAGTGTTATTCAGACTCACGGCAGCATGATGACTGCCGGGGTATCTTTGACAACCCCTACACTGAAATCTATTCATTCTCATGTGACAAACCGGCAAAGAAAGTCACCTGCAATGCTGACAAGAATCGCCCCTGTGAGATGTTCATCTGTGAATGTGACAGAAAAGCAGCCGAATGCTTTGCAAAAGCGGGTTACAACCCAGAGTACAAGTACTATCCTAGTCAAAACTGCAAATGACCTGACACGTGATAAAGTTTTAAGACTGTCCATAACGTCTCATTAAACTTAGCAATGGTATATCATGTAACAGTTTATTTTGTGTTCATGCTAATTGATATTTGATTCATAGCAGAGAGATTATTTAATGCTATTTACATTCGTGCAATTAAAAATATTTACTATATTTTAGTCTGTTATAGTCTGTTAGATATGAAGTGTAATATA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259034 lncRNA upstream 35185 5261031 ~ 5261370 (+) True G228274
TU259023 lncRNA upstream 97987 5198356 ~ 5198568 (+) True G228263
TU258999 lncRNA upstream 139774 5156422 ~ 5156781 (+) True G228243
TU258714 lncRNA upstream 170148 5125961 ~ 5126407 (+) True G227979
TU258709 lncRNA upstream 181752 5114577 ~ 5114803 (+) True G227974
TU259072 lncRNA downstream 110224 5411959 ~ 5412340 (+) True G228311
TU259070 lncRNA downstream 110834 5412569 ~ 5413283 (+) True G228309
TU259078 lncRNA downstream 128622 5430357 ~ 5430563 (+) True G228317
TU259084 lncRNA downstream 142739 5444474 ~ 5445162 (+) False CI01000053_05435608_05443587
TU259085 lncRNA downstream 142739 5444474 ~ 5444722 (+) True CI01000053_05435608_05443587
CI01000053_05267143_05269915.mRNA mRNA upstream 26121 5267099 ~ 5270434 (+) True CI01000053_05267143_05269915
CI01000053_05253537_05256485.mRNA mRNA upstream 39557 5253493 ~ 5256998 (+) True CI01000053_05253537_05256485
CI01000053_05235005_05242054.mRNA mRNA upstream 54218 5233707 ~ 5242337 (+) True CI01000053_05235005_05242054
CI01000053_05214150_05219071.mRNA mRNA upstream 76225 5214150 ~ 5220330 (+) True CI01000053_05214150_05219071
CI01000053_05187818_05191994.mRNA mRNA upstream 104321 5187693 ~ 5192234 (+) True CI01000053_05187818_05191994
CI01000053_05314523_05315601.mRNA mRNA downstream 12788 5314523 ~ 5316590 (+) True CI01000053_05314523_05315601
CI01000053_05320241_05329853.mRNA mRNA downstream 18506 5320241 ~ 5329864 (+) True CI01000053_05320241_05329853
CI01000053_05332254_05334016.mRNA mRNA downstream 30519 5332254 ~ 5334320 (+) True CI01000053_05332254_05334016
CI01000053_05338500_05348218.mRNA mRNA downstream 36765 5338500 ~ 5348218 (+) True CI01000053_05338500_05348218
CI01000053_05362044_05364177.mRNA mRNA downstream 59187 5360922 ~ 5365697 (+) True CI01000053_05362044_05364177
TU257989 other upstream 880962 4414951 ~ 4415593 (+) True G227317
TU256881 other upstream 1599026 3620798 ~ 3697529 (+) True G226399
TU256803 other upstream 2021644 3272374 ~ 3274911 (+) True G226347
TU256741 other upstream 2249772 3036602 ~ 3046783 (+) True G226292
TU256466 other upstream 2701088 2593227 ~ 2595467 (+) True CI01000053_02594164_02594541
TU259017 other downstream 73818 5375553 ~ 5378449 (+) True G228257
TU259080 other downstream 207509 5509244 ~ 5513074 (+) False CI01000053_05471449_05512831
TU259751 other downstream 1421464 6723199 ~ 6766877 (+) True G228900

Expression Profile