RNA id: TU260189



Basic Information


Item Value
RNA id TU260189
length 48
lncRNA type sense_over
GC content 0.36
exon number 1
gene id G229265
representative True

Chromosome Information


Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6309304 ~ 6309351 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTTTAGTTTTAATTTTTTTCCCAGTATGGGGTCACAAGTTGACTGTACAAAACAAATATTTTAGCAAATGTTCAATGAAACATTTGTTCACACCCAATACATGAATCACAATAAACACATCACCAAAGCAAAGGCTTCTGTTGTAGTGTTGAAATACAGTACACCAACTCAAAGTTATTGTGGAGAGATACAAGTTTTCAAAACAGAGCTGTGATCTCAGAGAAACATAATGCAAGTGGAAGGGAAAATTAGTGACAAATGTTCTCATTTATGTAGGATAAATACTCAAATGTGCCAGAATAATTGTATATTCAATAAAATTCATCATACAATTTAATATGTCCAATACAATTCTAATGAAAAAGTAAAGTAAATAAATAATAAACATACTTTTAACAGCTAATATCCAAGAAAAAAAAAAAAAAAACTTGAGAAACATTGCAGTCCATGATATTGGTGACTTCAAAAGCATGTCTGAATGCAGGCAAAAACATCAAACATATTCGATATTATGGCATGATGGGATGTTCGATGAATGAACATACTATTATAATTTATATTTGATGTACTTGGTTGTTGTTGTTTTTTCAAGCATCCTTAAAACAACCATACATTTTTAATATTTAGATGCCTTAAATGCTTGTAATGTTTTTATGCAGGTAAAATATTTTATGACAACACACATTAAAAAAAAACTTCTAAAATGATTACAAAATTCTGCAGATTTACAAACATAATACAGGTCAGTGCTTTGGAAAAAAGAATCACATGACAATAATAAATAAAGATCAGTTTATCTAGAAAACCATTTCTAGCTAATTTCAAAATCAAAGCTCAGTGGTCATAACTTTAGAGATGCACTAAAAATAAATAAATAAATAAAAACACACACAACAAAACTTCAGTCATGCAGTCATGGTTTTTACCAAAAATACTGCTAGGTTTTCTTAACACTTTTCTGAGCCTTTTTAAATGACGTTCAAGTTCGTGAGTATTTACAACTAGCTCATGTCATGCGTTACCCTGATGAGTCCCTCTGCATCTTCTATCATGCGGAACTCAATGCACAGACAAAAGTTCTGGTATGTGTCCTCGAGGATCCCTCTGCAATCCCCACACCTGACATGGAACCTCTGCTAATGGAGAAGGAGCTGTCCCGGAGCTAAAGCCTGAAGCCAGTGTTGTTCCAGAGCTCTAGCTAGTGCTCTGAAAGTCTATCCTGGCTGAGCCATTCCTGGAATGGCTTCCCACCCATGTCCCCACCTCTGGAAAATATATATATATCAGTCCCAGTCCATTCATGTTGAAATAATGGACATGCCAGTTTCTACTTGTTCCTGCCTCCTACGTTATCTCCTTTGTCTCCACCCAGTCTCCTGGCTCCTTCATCTCTGCCTAGTTTTCTGGCTCCTTCGTCTCTATCCAGTCCTCTGATCGTTAGTCTCCACCTAGTCTCCTGGCTCCTTTGTCACCTTCAGCCCTACAGCGTCACCAGGATTTATAGTTTCGCTGATTCTGCCATGGATTCCCCCATCGGCTCCTCCATGGACTCTTCGTTTGGTTCAGTTCTTTGTCCAGTATTGCCTTTGTGCAGATGTCAAAGCTGTTGCATTTGTCTACTCCTGCAACTCCTGTGATTTGGATGATCTTTTTTGTTTATAAATAAAGTTATATGGCTGCTTCTTGATTCACCTCTCCATGTCCTCTTCCTTTCCATGACCAGGCCATACAGCCTCTACTTATCCCTGCTAAAACATTACAGTGGTAATTTAACATTGTGGTTGTCTTAAATTAATAAAACTTACCCCTTGTTACAAGTATTATTATATAAGTATGTCTCTCTGTTAATATATTATTGTTTTAAAAAAGTAACAGTAGTAACCAAGGAATGTGGTTATGTTCAATAAAAGGAGTGCATGGCACTAGCCACACCAAAGGCATGGGTTCATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU260146 lncRNA downstream 72524 6234514 ~ 6234794 (-) True G229236
TU260145 lncRNA downstream 74157 6232905 ~ 6233161 (-) True G229235
TU260133 lncRNA downstream 84089 6222660 ~ 6223229 (-) True G229227
TU260109 lncRNA downstream 86094 6192641 ~ 6221224 (-) True G229207
TU260117 lncRNA downstream 153555 6152790 ~ 6153763 (-) True G229212
TU260358 lncRNA upstream 413873 6723224 ~ 6724500 (-) True G229423
TU260394 lncRNA upstream 456279 6765630 ~ 6766857 (-) True G229459
TU260399 lncRNA upstream 464996 6774347 ~ 6774826 (-) True G229464
TU260400 lncRNA upstream 465479 6774830 ~ 6775086 (-) True G229465
TU260406 lncRNA upstream 469969 6779320 ~ 6779632 (-) True G229471
CI01000053_06287804_06296687.mRNA mRNA downstream 10631 6287214 ~ 6296687 (-) True CI01000053_06287804_06296687
CI01000053_06162569_06179766.mRNA mRNA downstream 127216 6162079 ~ 6180102 (-) True CI01000053_06162569_06179766
CI01000053_06060129_06071679.mRNA mRNA downstream 235639 6059609 ~ 6071679 (-) True CI01000053_06060129_06071679
CI01000053_06038638_06043939.mRNA mRNA downstream 263379 6038336 ~ 6043939 (-) True CI01000053_06038638_06043939
CI01000053_05732296_05750809.mRNA mRNA downstream 556509 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
CI01000053_06662264_06720098.mRNA mRNA upstream 352235 6661586 ~ 6720662 (-) True CI01000053_06662264_06720098
CI01000053_06768909_06775364.mRNA mRNA upstream 458621 6767972 ~ 6776006 (-) True CI01000053_06768909_06775364
CI01000053_06777287_06806952.mRNA mRNA upstream 467891 6777242 ~ 6806952 (-) True CI01000053_06777287_06806952
CI01000053_06829449_06831635.mRNA mRNA upstream 519422 6828773 ~ 6831635 (-) True CI01000053_06829449_06831635
CI01000053_06881417_06887257.mRNA mRNA upstream 571344 6880695 ~ 6887369 (-) True CI01000053_06881417_06887257
TU259584 other downstream 375077 5931592 ~ 5932241 (-) True G228750
TU259481 other downstream 519628 5784483 ~ 5787690 (-) True G228651
TU258305 other downstream 2219578 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2754347 3552883 ~ 3552971 (-) True G227041

Expression Profile