RNA id: TU255939


Basic Information

Item Value
RNA id TU255939
length 346
lncRNA type intronic
GC content 0.27
exon number 2
gene id G225620
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 552476 ~ 556059 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAACTTTCTATTCATCAAAGATTTTCAATTTTAAATAAATGCTGTTTTTAACTTTCTATTCATCAAAGAATCTTGTTGCGTAATATTTTTGCGGAAACTGTGATGCAACTGTTTTCAACATTGGTAATACTAAGAAATGAGCACCAAATCAACATTAGAATGATTTATGAAGGATCGTGTGACATTAAAGACTGGAGTAAAGTTGCAGAAAATCACAGGAATAAATTACATTTTAAACTATATTAAAATAGGAAAAAAAATCACAATATTATTGTTTTAATAAATGCAGCCTTGGTGAGCATAAATGATCCTATGATCCTTCAAAAACATTTTAAGAAATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255884 lncRNA downstream 24946 526117 ~ 527530 (-) True G225570
TU255885 lncRNA downstream 26531 524494 ~ 525945 (-) True G225571
TU255925 lncRNA downstream 59187 493053 ~ 493289 (-) True G225606
TU255923 lncRNA downstream 61344 490923 ~ 491132 (-) True G225604
TU255730 lncRNA downstream 169567 382751 ~ 382909 (-) False G225433
TU255941 lncRNA upstream 14997 571056 ~ 571257 (-) True G225622
TU255990 lncRNA upstream 191322 747381 ~ 747619 (-) True G225665
TU255993 lncRNA upstream 193192 749251 ~ 749495 (-) True G225668
TU255876 lncRNA upstream 252108 808167 ~ 809734 (-) True G225563
TU255872 lncRNA upstream 257569 813628 ~ 814240 (-) True G225561
CI01000053_00496924_00507195.mRNA mRNA downstream 45281 496723 ~ 507195 (-) True CI01000053_00496924_00507195
CI01000053_00454429_00457235.mRNA mRNA downstream 95241 454412 ~ 457235 (-) True CI01000053_00454429_00457235
CI01000053_00432322_00449797.mRNA mRNA downstream 102679 432269 ~ 449797 (-) True CI01000053_00432322_00449797
CI01000053_00390989_00410148.mRNA mRNA downstream 142328 390799 ~ 410148 (-) True CI01000053_00390989_00410148
CI01000053_00379771_00382260.mRNA mRNA downstream 170216 379709 ~ 382260 (-) False CI01000053_00379771_00382260
CI01000053_00629840_00639156.mRNA mRNA upstream 73654 629713 ~ 639171 (-) True CI01000053_00629840_00639156
CI01000053_00647818_00652652.mRNA mRNA upstream 91649 647708 ~ 652719 (-) True CI01000053_00647818_00652652
CI01000053_00656235_00664346.mRNA mRNA upstream 99392 655451 ~ 664346 (-) True CI01000053_00656235_00664346
CI01000053_00667421_00672829.mRNA mRNA upstream 111016 667075 ~ 674421 (-) True CI01000053_00667421_00672829
CI01000053_00678066_00685960.mRNA mRNA upstream 121873 677932 ~ 687806 (-) True CI01000053_00678066_00685960
TU255892 other downstream 5608 543647 ~ 546868 (-) True G225574
TU256158 other upstream 903536 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1661389 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 2009833 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2440658 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2994274 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile