RNA id: TU255876


Basic Information

Item Value
RNA id TU255876
length 426
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G225563
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 808167 ~ 809734 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGCGTAAAATCACTTACCAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCCTCTCAGTGTCTGTGAATGCTACATAACTTGGAGTGGTCCTGTTACCCTGGTCATTGGCAATGATTTCAACTTTGCCATGCTGAAAGACCCCCACGCAGGAGTAGGTGGTCCCCAGGTCAATGCCAACTGCTGGTCCCTTTGACATGGTTGTTTCTGCTGGCAGCCAGATGAAACGCTGACTCTGTCAATCACTTGCTGTGTCGTAGCTCGAAACGCGCGCGATCTCTCTGCAGCAGAACTGTCTGTGCCGTAATGCGCTTTAAGACTTCCTGAGAACAGTCCAGAACATGGAACGAGCGCAGCAGCCAATCAGAACGCACGGTCGCTGAAGCGTCCAGAGATGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255993 lncRNA downstream 58672 749251 ~ 749495 (-) True G225668
TU255990 lncRNA downstream 60548 747381 ~ 747619 (-) True G225665
TU255941 lncRNA downstream 236910 571056 ~ 571257 (-) True G225622
TU255939 lncRNA downstream 252108 552476 ~ 556059 (-) True G225620
TU255884 lncRNA downstream 280637 526117 ~ 527530 (-) True G225570
TU255872 lncRNA upstream 3894 813628 ~ 814240 (-) True G225561
TU256003 lncRNA upstream 6670 816404 ~ 816668 (-) True G225678
TU256012 lncRNA upstream 96826 906560 ~ 907001 (-) True G225687
TU256015 lncRNA upstream 128851 938585 ~ 938904 (-) True G225690
TU256016 lncRNA upstream 129262 938996 ~ 939349 (-) True G225691
CI01000053_00797990_00802827.mRNA mRNA downstream 5107 797707 ~ 803060 (-) True CI01000053_00797990_00802827
CI01000053_00739813_00746803.mRNA mRNA downstream 61136 739662 ~ 747031 (-) True CI01000053_00739813_00746803
CI01000053_00733357_00737206.mRNA mRNA downstream 70840 733315 ~ 737327 (-) True CI01000053_00733357_00737206
CI01000053_00696659_00703507.mRNA mRNA downstream 104660 696362 ~ 703507 (-) True CI01000053_00696659_00703507
CI01000053_00678066_00685960.mRNA mRNA downstream 120361 677932 ~ 687806 (-) True CI01000053_00678066_00685960
CI01000053_00815725_00817893.mRNA mRNA upstream 5863 815597 ~ 817893 (-) True CI01000053_00815725_00817893
CI01000053_00830433_00864331.mRNA mRNA upstream 20464 830198 ~ 864373 (-) True CI01000053_00830433_00864331
CI01000053_00865420_00881846.mRNA mRNA upstream 55639 865373 ~ 881846 (-) True CI01000053_00865420_00881846
CI01000053_00956174_00961278.mRNA mRNA upstream 146275 956009 ~ 961278 (-) True CI01000053_00956174_00961278
CI01000053_00968102_00970741.mRNA mRNA upstream 158309 968043 ~ 971775 (-) True CI01000053_00968102_00970741
TU255892 other downstream 261299 543647 ~ 546868 (-) True G225574
TU256158 other upstream 649861 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1407714 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1756158 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2186983 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2740599 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile