RNA id: TU256003



Basic Information


Item Value
RNA id TU256003
length 265
lncRNA type intronic
GC content 0.34
exon number 1
gene id G225678
representative True

Chromosome Information


Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 816404 ~ 816668 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGACTTTGGCAGTTTGATACATGCTCCGAACCACTGATTTGATACAAAAGATTCGTAAAGCTTCGAAGCTTAATGAAGCAGCGTTTTGAAATCACCCATCACTAGATATTGTGGAATAAAGTCGCTATTTTGTTATTTTTGGTGCACAAAAAGTATTCTAGTCGCTTTATAATATTAAGTTTGAACCACTGTAGTCACATGAACTGATTTAAATATGTTTAAATATGGGCATTGAAAAAGAGAGTGTTATTGCTGTCAATGCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU255872 lncRNA downstream 2164 813628 ~ 814240 (-) True G225561
TU255876 lncRNA downstream 6670 808167 ~ 809734 (-) True G225563
TU255993 lncRNA downstream 66909 749251 ~ 749495 (-) True G225668
TU255990 lncRNA downstream 68785 747381 ~ 747619 (-) True G225665
TU255941 lncRNA downstream 245147 571056 ~ 571257 (-) True G225622
TU256012 lncRNA upstream 89892 906560 ~ 907001 (-) True G225687
TU256015 lncRNA upstream 121917 938585 ~ 938904 (-) True G225690
TU256016 lncRNA upstream 122328 938996 ~ 939349 (-) True G225691
TU256017 lncRNA upstream 123913 940581 ~ 940782 (-) True G225692
TU255895 lncRNA upstream 138135 954803 ~ 955238 (-) True G225577
CI01000053_00797990_00802827.mRNA mRNA downstream 13344 797707 ~ 803060 (-) True CI01000053_00797990_00802827
CI01000053_00739813_00746803.mRNA mRNA downstream 69373 739662 ~ 747031 (-) True CI01000053_00739813_00746803
CI01000053_00733357_00737206.mRNA mRNA downstream 79077 733315 ~ 737327 (-) True CI01000053_00733357_00737206
CI01000053_00696659_00703507.mRNA mRNA downstream 112897 696362 ~ 703507 (-) True CI01000053_00696659_00703507
CI01000053_00678066_00685960.mRNA mRNA downstream 128598 677932 ~ 687806 (-) True CI01000053_00678066_00685960
CI01000053_00830433_00864331.mRNA mRNA upstream 13530 830198 ~ 864373 (-) True CI01000053_00830433_00864331
CI01000053_00865420_00881846.mRNA mRNA upstream 48705 865373 ~ 881846 (-) True CI01000053_00865420_00881846
CI01000053_00956174_00961278.mRNA mRNA upstream 139341 956009 ~ 961278 (-) True CI01000053_00956174_00961278
CI01000053_00968102_00970741.mRNA mRNA upstream 151375 968043 ~ 971775 (-) True CI01000053_00968102_00970741
CI01000053_00974193_00978185.mRNA mRNA upstream 156593 973261 ~ 978185 (-) True CI01000053_00974193_00978185
TU255892 other downstream 269536 543647 ~ 546868 (-) True G225574
TU256158 other upstream 642927 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1400780 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1749224 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2180049 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2733665 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile