RNA id: TU256015


Basic Information

Item Value
RNA id TU256015
length 320
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G225690
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 938585 ~ 938904 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAACATTGAGGTTTAGTTCCCCTAACAGGCCTATACCTCCTGGGATGATGACATTGCAGATGTAGCGCCCGGAGTCAGACTCCTGCGTGTTGTTTATGTAGATGGACAGATTGGCGGAGGGCATAGACATGGCAAAACCCACCCGCTTCCGAAAGTCAGCGCTACCGATGCCAATCTGCCCTGAGGAATAGGAGATGACCTGCAGTGCAAAAGCACACAGTGACACCTTTACACGCAATAGGCATCTGCAATACTACACGTTTGCATATTGGTTGTGTGAACCAATCAGATCTGTCTTGATTTGCTGCTCAAGAAACAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256012 lncRNA downstream 31584 906560 ~ 907001 (-) True G225687
TU256003 lncRNA downstream 121917 816404 ~ 816668 (-) True G225678
TU255872 lncRNA downstream 124345 813628 ~ 814240 (-) True G225561
TU255876 lncRNA downstream 128851 808167 ~ 809734 (-) True G225563
TU255993 lncRNA downstream 189090 749251 ~ 749495 (-) True G225668
TU256016 lncRNA upstream 92 938996 ~ 939349 (-) True G225691
TU256017 lncRNA upstream 1677 940581 ~ 940782 (-) True G225692
TU255895 lncRNA upstream 15899 954803 ~ 955238 (-) True G225577
TU255900 lncRNA upstream 16486 955390 ~ 955663 (-) True G225581
TU256023 lncRNA upstream 20686 959590 ~ 1066551 (-) True G225698
CI01000053_00865420_00881846.mRNA mRNA downstream 56739 865373 ~ 881846 (-) True CI01000053_00865420_00881846
CI01000053_00830433_00864331.mRNA mRNA downstream 74212 830198 ~ 864373 (-) True CI01000053_00830433_00864331
CI01000053_00815725_00817893.mRNA mRNA downstream 120692 815597 ~ 817893 (-) True CI01000053_00815725_00817893
CI01000053_00797990_00802827.mRNA mRNA downstream 135525 797707 ~ 803060 (-) True CI01000053_00797990_00802827
CI01000053_00739813_00746803.mRNA mRNA downstream 191554 739662 ~ 747031 (-) True CI01000053_00739813_00746803
CI01000053_00956174_00961278.mRNA mRNA upstream 17105 956009 ~ 961278 (-) True CI01000053_00956174_00961278
CI01000053_00968102_00970741.mRNA mRNA upstream 29139 968043 ~ 971775 (-) True CI01000053_00968102_00970741
CI01000053_00974193_00978185.mRNA mRNA upstream 34357 973261 ~ 978185 (-) True CI01000053_00974193_00978185
CI01000053_01063383_01064712.mRNA mRNA upstream 124325 1063229 ~ 1065716 (-) False CI01000053_01063383_01064712
CI01000053_01124489_01129327.mRNA mRNA upstream 184855 1123759 ~ 1129359 (-) True CI01000053_01124489_01129327
TU255892 other downstream 391717 543647 ~ 546868 (-) True G225574
TU256158 other upstream 520691 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1278544 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1626988 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2057813 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2611429 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile