RNA id: TU256158


Basic Information

Item Value
RNA id TU256158
length 2714
RNA type TUCP
GC content 0.42
exon number 4
gene id G225812
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1459595 ~ 1466732 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAATGTTTTAATGAGTTTAATCAAAATGTGTTAGAACAACACAATTTACAACATGTTCTTTGCTTATCATTGTAAAGCTCACCCATACTGCTATTTCATGGGTCAAATCCCCATAAGCTATACATGGAACGATTTATAGTTTTGGGGCAAACTGGCAGTGAACAACTTGTGTACAGTGGGCAAACAAAAGTATCTTCCATTCTCCCCAAAACTTAGAAAGCATAGAAATCATGAAAACACCCAGAACAGACACCATTTCTCCACCAGACTGCCATGAACTGGCTCAAGTGAGGTCACACAATTCAGGCCAGAGATGGGCAAGCAGATCATGCAATGAGTGATGGCATAAGAACTCTTGTCAGAGTCACATGTGTGTCCCATCAGTCCCAATTCATACAGGACTGTTAACATAGGTCATGTTATAAAAGGACAATCAGTGGTTACTGCAAAGCTATGCAAATTTCTTGAATAAACAAAAAAGACAACAACAAAAATCCATCTCGATAACACAATCACAGTGCACAAGCTTGCAGGTGACAGTGTGAAACATCTCTCCAGAGGTAAACGGTATAAAAATCATCAGATATTTAGTTTAAGTTGATGCTTTAGGAGCAAGTTGGAAGAATGATTTAATGTATAAATCCCAAATATTAGAAACACACGATAACTGTAAAAACTGATCTAATAAAGACTTCAGCAGAGAATCAAATGGATCATTTGAAATCTTTATCAGACATTCGGTCATATAACAGTACATGTTAAAATATCTTTTAAAAGATATTTTTTTTGTCTTTACATAACTGCCATTATCCCATTATCATCATCCAAGAGGCATCCAAAATAGTTAAGTGTAAATAAAACATAATGGTAATAAAATACAAAACTAACAACGAATCAAACCTAGCCCTCAAACACTCAAGATAAAAAAATAAGAGAATTCATTTACATTTTAACAATGTACTATGCAAATAAAACGTTCATGTATTACTGAATAGATAATTCTCCTGAATAACTTGATGCCCTGTTGTAATAATCATCCTTTTGATGTAAACGTACAAAGGAACAAAAGAAAGAACATCTTTGAATTATATGAATTTGATGTCCGTTTAACTCCTCAAACAGAAATTTCTGAAAGTGTAGCCTACTCAAATCAACAAAAACTAAAAGGAAATGCATACATGAATTCTGTCTGTAGAATATACACCGTTTTGTTCAGAAATTCATTAAGGGCACTGTTAAACAAACACGCTCATGGTCACCACGACGCTTTTGCTCCTCCATTCGTCTTCATGCTTTACTTTCAGTGTTGTTTGTTTGCGAGAGGGCGTTGGGTTCTGCTCCCGTGCCGGGCGCAACTTTCTTCAGCTCTGCGTTTTCAGTCGTACTCCTCTCATCATCCAGAATTTTCCTGGGATTAAGACCGTCCTGTGCTGGAGCAGATGGGCCACTGGAGCCAGCTGTCCCCACAGCATGTGACCCATCCTGCGGGATGTCTGTGTCTGAAGCCAGTGGGAGTTCTCCATCAATCTCAAGTTCATGATTCACTAAGGGGATAGCGACACTGCCCTGTGGGCTGATGGGATTTAAAGTGGCATGAGATGCACTCCGAACAGACTCGGGCGACTCTACTTCATTTTCTGTGACTTTTGAATTTATAGCACCGGGTTGGACAACGCTGGGAATGGAAGAGGGGACCACTTCTGACGGGACCACTGGAGGAACCTCAGCTAGTGTTTCTAGGGCATCACCCAGGTCTACCAGGAGAGTAACATTAGCCGGGTCGCAAGACGAGGGAGATGAGATGGAGGGTTTGGTGTGAGTTTTGGGTGTGCTGCTGTCGGGGGGTGTCATATGGACAAGGTTAGGAGGGTCAGAAGGAGGTGCTGTGATGCTGGAGGTGAGAGTGGTGCTCTCGCTAACTGGGCTGCTCTGGCTGAGGTCAAAGGTGTCAGTGACTGTGTCTGAGTTAGTGGGCACAGAAAGAGGCAAGTCCACCACTGCGGCGGCAGTTTCCGTCACTTGCCTGTGAGAATCTGGTTCGGTCAGTGGGGTGGTCTCATTGGGCTCAGGATGTCCTTCTGCGTCATGATTGGCTGTGGCCTCTTCCTCTGTCCTCACTTCTACAATGGGTTCTTTAGACACATCTTGAACAAAGGCAGCTTTGCCCGTCTCTATGTCTTTGCCCTTGGTGCCTTGCCCGGGTTTACCGCAGATGCACATGAGGATGCCACACTTGTTGACAAAGCAGCAGGTGGCGTCCACGATCAGCAAGAGCAGCACACACACCAGTATAAGAATACCAACAATTACTCCAGTGTTCAAGCCTGTCCCATCTTCCATGGAGTCTTGAGGAGAAAGAGGAGAAATACAGAGACACAGACAGAGCAGGAGGGATCATCAACCCAAACTGGAGATACATGAAATGTATTGCACAAAATACATGAAATGTAACAGCCAAGCAAGCATGAGTAATTTTCAGATCACAAGATTCAACAAAGCAAAGACAATTGGTGAAGCCAACAAGGCAAAGCTAACAACTCCCCCTTCAGATGTAATTGTGCACTCGCTGAATATAATACACATACACATGTTTGGACTTAAAGGGATAGTTCACCCAATAATTCTGTATTTACTCACACTCATGTTGTTTTAAACTATGGCTTTCTTTTGTAATATCCTGGCTGTACTTTTTAATATAATGAAAATGAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256161 lncRNA downstream 52342 1359824 ~ 1407253 (-) True G225813
TU256071 lncRNA downstream 161543 1269524 ~ 1298052 (-) True G225731
TU256065 lncRNA downstream 169638 1285426 ~ 1289957 (-) True G225725
TU256072 lncRNA downstream 179450 1273303 ~ 1280145 (-) True G225732
TU256079 lncRNA downstream 362452 1096479 ~ 1097143 (-) True G225738
TU256155 lncRNA upstream 62410 1529142 ~ 1531002 (-) True G225809
TU256233 lncRNA upstream 76796 1543528 ~ 1543742 (-) True G225884
TU256240 lncRNA upstream 78119 1544851 ~ 1545187 (-) True G225886
TU256244 lncRNA upstream 82775 1549507 ~ 1549859 (-) True G225888
TU257023 lncRNA upstream 153204 1619936 ~ 1622818 (-) True G226513
CI01000053_01166907_01193322.mRNA mRNA downstream 266273 1166476 ~ 1193322 (-) True CI01000053_01166907_01193322
CI01000053_01124489_01129327.mRNA mRNA downstream 330236 1123759 ~ 1129359 (-) True CI01000053_01124489_01129327
CI01000053_01063383_01064712.mRNA mRNA downstream 393879 1063229 ~ 1065716 (-) False CI01000053_01063383_01064712
CI01000053_00974193_00978185.mRNA mRNA downstream 481410 973261 ~ 978185 (-) True CI01000053_00974193_00978185
CI01000053_00968102_00970741.mRNA mRNA downstream 487820 968043 ~ 971775 (-) True CI01000053_00968102_00970741
CI01000053_01603290_01609575.mRNA mRNA upstream 136196 1602928 ~ 1609575 (-) True CI01000053_01603290_01609575
CI01000053_01629699_01639689.mRNA mRNA upstream 162554 1629286 ~ 1639763 (-) True CI01000053_01629699_01639689
CI01000053_01655618_01660681.mRNA mRNA upstream 188816 1655548 ~ 1660737 (-) True CI01000053_01655618_01660681
CI01000053_01720326_01736077.mRNA mRNA upstream 253566 1720298 ~ 1736077 (-) True CI01000053_01720326_01736077
CI01000053_01759982_01765920.mRNA mRNA upstream 291953 1758685 ~ 1766084 (-) True CI01000053_01759982_01765920
TU255892 other downstream 912727 543647 ~ 546868 (-) True G225574
TU257051 other upstream 750716 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1099160 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 1529985 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2083601 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 2083927 3552883 ~ 3552971 (-) True G227041

Expression Profile