RNA id: TU257058


Basic Information

Item Value
RNA id TU257058
length 333
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G226542
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1931548 ~ 1931880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAATAACGACTTTTCAACAATATCTAGTGATGGCCGATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTTACGAATCTTGTTTCGAATCAGTGATTCGGATCACGTATCAAACTGCCAAAGTTACGTGAACTATTGAAATTTCAAAACACTTACGATGTAACAAAGCCTTGTTTACTGAAATCACGTGAATTTGGTGCTCCGAACCACTGATTTGAAACAAAAGATTCGTAAACCTTCGAAGCAGTGTTCTGAAATCCGCCATCATTAGATATTGTTGAAAGTCGTTATTTTGTTTTTTTTGGCGCACAAAAATTATTCTCGTCGCTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257069 lncRNA downstream 211 1929839 ~ 1931337 (-) True G226553
TU257134 lncRNA downstream 154890 1776450 ~ 1776658 (-) True G226614
TU257129 lncRNA downstream 183461 1747880 ~ 1748087 (-) True G226609
TU257126 lncRNA downstream 188783 1742460 ~ 1742765 (-) True G226606
TU257023 lncRNA downstream 308730 1619936 ~ 1622818 (-) True G226513
TU257053 lncRNA upstream 50422 1982302 ~ 1982708 (-) False CI01000053_01982526_02001150
TU257052 lncRNA upstream 50460 1982340 ~ 1982708 (-) True CI01000053_01982526_02001150
TU257173 lncRNA upstream 131530 2063410 ~ 2063725 (-) True G226645
TU257175 lncRNA upstream 136651 2068531 ~ 2068740 (-) True G226647
TU257177 lncRNA upstream 151498 2083378 ~ 2083915 (-) True G226649
CI01000053_01847036_01856935.mRNA mRNA downstream 74318 1845726 ~ 1857230 (-) True CI01000053_01847036_01856935
CI01000053_01819436_01827270.mRNA mRNA downstream 102957 1818987 ~ 1828591 (-) True CI01000053_01819436_01827270
CI01000053_01759982_01765920.mRNA mRNA downstream 165464 1758685 ~ 1766084 (-) True CI01000053_01759982_01765920
CI01000053_01720326_01736077.mRNA mRNA downstream 195471 1720298 ~ 1736077 (-) True CI01000053_01720326_01736077
CI01000053_01655618_01660681.mRNA mRNA downstream 270811 1655548 ~ 1660737 (-) True CI01000053_01655618_01660681
CI01000053_01932882_01958701.mRNA mRNA upstream 975 1932855 ~ 1960172 (-) True CI01000053_01932882_01958701
CI01000053_01964024_01971099.mRNA mRNA upstream 31534 1963414 ~ 1971099 (-) True CI01000053_01964024_01971099
CI01000053_01982526_02001150.mRNA mRNA upstream 50443 1982323 ~ 2001150 (-) False CI01000053_01982526_02001150
CI01000053_02003828_02014352.mRNA mRNA upstream 71030 2002910 ~ 2014352 (-) True CI01000053_02003828_02014352
CI01000053_02029813_02031204.mRNA mRNA upstream 97933 2029813 ~ 2031790 (-) True CI01000053_02029813_02031204
TU256158 other downstream 464816 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1384680 543647 ~ 546868 (-) True G225574
TU257051 other upstream 285568 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 634012 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 1064837 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1618453 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1618779 3552883 ~ 3552971 (-) True G227041

Expression Profile