RNA id: TU257173


Basic Information

Item Value
RNA id TU257173
length 316
lncRNA type intronic
GC content 0.39
exon number 1
gene id G226645
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2063410 ~ 2063725 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGATTTGGCCTGATTCGAGGCTTGTTGCAAATGATTTTTTGTCCAAAAAAATCGATTGTCCTCCATTTGTTTTTCTTCTCAAGTCATGTTTGATTTTGCGAGTCTCCATGAGATCACGTCACTGTAAAATCCTTCTTGCAGTCAACAGGTGTGTGGTCTCACAGTCCGGTTAAATCATCTAGTGTGTGAGTTCAGAGGATTATAATGCTAAAAATTGGCTGAAACTGTCATTATGTCTGTGGTCTCCCACAGTTTTAAAATCAGTTAAGATTTGAAAATCGTTTAGTGTGTCCCAGGCCTTAGTTTGGTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257053 lncRNA downstream 80702 1982302 ~ 1982708 (-) False CI01000053_01982526_02001150
TU257052 lncRNA downstream 80702 1982340 ~ 1982708 (-) True CI01000053_01982526_02001150
TU257058 lncRNA downstream 131530 1931548 ~ 1931880 (-) True G226542
TU257069 lncRNA downstream 132073 1929839 ~ 1931337 (-) True G226553
TU257134 lncRNA downstream 286752 1776450 ~ 1776658 (-) True G226614
TU257175 lncRNA upstream 4806 2068531 ~ 2068740 (-) True G226647
TU257177 lncRNA upstream 19653 2083378 ~ 2083915 (-) True G226649
TU257059 lncRNA upstream 39668 2103393 ~ 2104463 (-) True G226543
TU257185 lncRNA upstream 42497 2106222 ~ 2106444 (-) True G226657
TU257186 lncRNA upstream 43005 2106730 ~ 2107029 (-) True G226658
CI01000053_02032534_02040859.mRNA mRNA downstream 21973 2032380 ~ 2041437 (-) True CI01000053_02032534_02040859
CI01000053_02029813_02031204.mRNA mRNA downstream 31620 2029813 ~ 2031790 (-) True CI01000053_02029813_02031204
CI01000053_02003828_02014352.mRNA mRNA downstream 49058 2002910 ~ 2014352 (-) True CI01000053_02003828_02014352
CI01000053_01982526_02001150.mRNA mRNA downstream 62260 1982323 ~ 2001150 (-) False CI01000053_01982526_02001150
CI01000053_01964024_01971099.mRNA mRNA downstream 92311 1963414 ~ 1971099 (-) True CI01000053_01964024_01971099
CI01000053_02109802_02117454.mRNA mRNA upstream 45446 2109171 ~ 2117957 (-) True CI01000053_02109802_02117454
CI01000053_02122241_02132642.mRNA mRNA upstream 57904 2121629 ~ 2132787 (-) True CI01000053_02122241_02132642
CI01000053_02145248_02149126.mRNA mRNA upstream 81453 2145178 ~ 2149381 (-) True CI01000053_02145248_02149126
CI01000053_02225226_02226481.mRNA mRNA upstream 161485 2225210 ~ 2226481 (-) False CI01000053_02225226_02226481
CI01000053_02241056_02246083.mRNA mRNA upstream 176838 2240563 ~ 2246301 (-) True CI01000053_02241056_02246083
TU256158 other downstream 596678 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1516542 543647 ~ 546868 (-) True G225574
TU257051 other upstream 153723 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 502167 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 932992 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1486608 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1486934 3552883 ~ 3552971 (-) True G227041

Expression Profile