RNA id: TU257177


Basic Information

Item Value
RNA id TU257177
length 217
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G226649
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2083378 ~ 2083915 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGATCCTCCAATGATGGCACCTTTAGATGATGTCACAGTCAGCTTCGAAATCATCACCTCCACCGTAGCGGTCCTTGAAGTATCCTTCACAGCATAGACGGTCTCATCAAAGCTGTATTTTCCAACGGCAGTGATCTTTTCTAATTTGTCCTGAACATCATGTATGAAAACATCGGCATCAATGGTAATTTCCTTCAGCTCTTTCATGGTACAGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257175 lncRNA downstream 14638 2068531 ~ 2068740 (-) True G226647
TU257173 lncRNA downstream 19653 2063410 ~ 2063725 (-) True G226645
TU257053 lncRNA downstream 100670 1982302 ~ 1982708 (-) False CI01000053_01982526_02001150
TU257052 lncRNA downstream 100670 1982340 ~ 1982708 (-) True CI01000053_01982526_02001150
TU257058 lncRNA downstream 151498 1931548 ~ 1931880 (-) True G226542
TU257059 lncRNA upstream 19478 2103393 ~ 2104463 (-) True G226543
TU257185 lncRNA upstream 22307 2106222 ~ 2106444 (-) True G226657
TU257186 lncRNA upstream 22815 2106730 ~ 2107029 (-) True G226658
TU257188 lncRNA upstream 54653 2138568 ~ 2138991 (-) True G226660
TU257042 lncRNA upstream 55627 2139542 ~ 2142470 (-) False G226530
CI01000053_02041737_02066520.mRNA mRNA downstream 16720 2041690 ~ 2066658 (-) True CI01000053_02041737_02066520
CI01000053_02032534_02040859.mRNA mRNA downstream 41941 2032380 ~ 2041437 (-) True CI01000053_02032534_02040859
CI01000053_02029813_02031204.mRNA mRNA downstream 51588 2029813 ~ 2031790 (-) True CI01000053_02029813_02031204
CI01000053_02003828_02014352.mRNA mRNA downstream 69026 2002910 ~ 2014352 (-) True CI01000053_02003828_02014352
CI01000053_01982526_02001150.mRNA mRNA downstream 82228 1982323 ~ 2001150 (-) False CI01000053_01982526_02001150
CI01000053_02109802_02117454.mRNA mRNA upstream 25256 2109171 ~ 2117957 (-) True CI01000053_02109802_02117454
CI01000053_02122241_02132642.mRNA mRNA upstream 37714 2121629 ~ 2132787 (-) True CI01000053_02122241_02132642
CI01000053_02145248_02149126.mRNA mRNA upstream 61263 2145178 ~ 2149381 (-) True CI01000053_02145248_02149126
CI01000053_02225226_02226481.mRNA mRNA upstream 141295 2225210 ~ 2226481 (-) False CI01000053_02225226_02226481
CI01000053_02241056_02246083.mRNA mRNA upstream 156648 2240563 ~ 2246301 (-) True CI01000053_02241056_02246083
TU256158 other downstream 616646 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1536510 543647 ~ 546868 (-) True G225574
TU257051 other upstream 133533 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 481977 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 912802 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1466418 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1466744 3552883 ~ 3552971 (-) True G227041

Expression Profile