RNA id: TU257185


Basic Information

Item Value
RNA id TU257185
length 223
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G226657
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2106222 ~ 2106444 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCAGGCTAGATCAAGCTAATGCGCATGCGCAGTCCTAAATGCGCATCTCGCCTCTCATTTCGGAAGCGCGCGAGCTTCTAACGGCCGCTGCAGTGACGCAATGACTTTACCAATCGGTGATTGGCTCCTATTTAGAAGGCGGGGCTTATTCCGCCATATTGCGCGTTGCACTTTCTCCCGTTCAAAACAATACGAGTGACGCGTCTTGTGTTATTCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257059 lncRNA downstream 1759 2103393 ~ 2104463 (-) True G226543
TU257177 lncRNA downstream 22307 2083378 ~ 2083915 (-) True G226649
TU257175 lncRNA downstream 37482 2068531 ~ 2068740 (-) True G226647
TU257173 lncRNA downstream 42497 2063410 ~ 2063725 (-) True G226645
TU257053 lncRNA downstream 123514 1982302 ~ 1982708 (-) False CI01000053_01982526_02001150
TU257186 lncRNA upstream 286 2106730 ~ 2107029 (-) True G226658
TU257188 lncRNA upstream 32124 2138568 ~ 2138991 (-) True G226660
TU257042 lncRNA upstream 33098 2139542 ~ 2142470 (-) False G226530
TU257043 lncRNA upstream 33098 2139542 ~ 2142470 (-) True G226530
TU257189 lncRNA upstream 44885 2151329 ~ 2151649 (-) True G226661
CI01000053_02041737_02066520.mRNA mRNA downstream 39564 2041690 ~ 2066658 (-) True CI01000053_02041737_02066520
CI01000053_02032534_02040859.mRNA mRNA downstream 64785 2032380 ~ 2041437 (-) True CI01000053_02032534_02040859
CI01000053_02029813_02031204.mRNA mRNA downstream 74432 2029813 ~ 2031790 (-) True CI01000053_02029813_02031204
CI01000053_02003828_02014352.mRNA mRNA downstream 91870 2002910 ~ 2014352 (-) True CI01000053_02003828_02014352
CI01000053_01982526_02001150.mRNA mRNA downstream 105072 1982323 ~ 2001150 (-) False CI01000053_01982526_02001150
CI01000053_02109802_02117454.mRNA mRNA upstream 2727 2109171 ~ 2117957 (-) True CI01000053_02109802_02117454
CI01000053_02122241_02132642.mRNA mRNA upstream 15185 2121629 ~ 2132787 (-) True CI01000053_02122241_02132642
CI01000053_02145248_02149126.mRNA mRNA upstream 38734 2145178 ~ 2149381 (-) True CI01000053_02145248_02149126
CI01000053_02225226_02226481.mRNA mRNA upstream 118766 2225210 ~ 2226481 (-) False CI01000053_02225226_02226481
CI01000053_02241056_02246083.mRNA mRNA upstream 134119 2240563 ~ 2246301 (-) True CI01000053_02241056_02246083
TU256158 other downstream 639490 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1559354 543647 ~ 546868 (-) True G225574
TU257051 other upstream 111004 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 459448 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 890273 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1443889 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1444215 3552883 ~ 3552971 (-) True G227041

Expression Profile