RNA id: TU257043



Basic Information


Item Value
RNA id TU257043
length 2065
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G226530
representative True

Chromosome Information


Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2139542 ~ 2142470 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTAACTTTGACCTTCACTGTGCTGAGCGCCAAACCCTGCGAGTCTAGAACTTTGTATGTTCCGGCACTGCTGGCCGTAACCCTCTTAAAAAACAACTTGTTGTTGCTCTCTTTTGGATAGCCTTTCTTGCCAATGTCTGCACCTCTTTCCCACAAGACTGTCCAGCTGGAGTCATTTCTGTTTTGAAAAATCACTTGCTCAGCTTGATGCGTGTACAGATCCAGGATCAGGTCTGCTCCAGTCTCCACAGATTTGATAGTCTTGTGATCTACCGTGGGAAGAGACAAGCCAACAACTGCAAGCTGGACGCTCTGAATGAAAATTCGGTTCTTGAAACTTGATTCACCAACCACCAGGTAACACTCGTAAATGCCTGCATCACTGAATCTGACATCCCACAAGAACAGAGAGCAGTTCCCCCTCATAAGCATTTCCTCAGGCACATCCGCCCGGTCTCTGTAAGCCTCTCCTTGAAACAGTTCCTCTCCCATTCGCTCAAACACTGAACTGGTTATGGTCTGCCACTGAATGTGAGGCGTGTGAGCAGAGTCCAGCTGTGATGCCACAGTACACGGCAGCACAGCTGGCAGACCAACCTTCGATGAGGTGTAGACAACGCTCGAGAGGGGAGAGGAGCCTATAGGGATAAATTATTATTTAACTATGTAAAAAGCAAAAATGCTTATAAATAGCCTAATAAAGTTAGCCTACTATTGTCATTGTCTACTTACCAACACAAATGAGAAGCCATTGCATTAGAAAGGCCAAAACCCTGTGAAGAAATGTTATATAGATTAAATTATAATTACAGAGACTGAAATTCTCTTTACAAATGATCCAACTTTCTCAGAACTTTGGCTAACAAGGTTCTGTCAAACAGTATTCCAGTAACGTTAATAGAACGTTCGTTCATATGGTCGTTAAAATTCTCAAAACATTAGCACAAAAACATTATTTATACATTGTTCATGGAACTTTTTTTTTTTCTGAAATGTTTTAGTTGGTTGTTCGTCATTTTGTAAATGTTACTGCTTCAGACTGTTTATACTAGAACATTCTAATGTAACGTAGCCGTAATGTTTGCAAAATGATAAAATAAAATGTTCCCTTAAACTTTGTATAACCAAGAAAGACGCTTTGAACGTTCAGAGATCATTCAGAATAATGTTTTCATTACTCAATGGGAACTTTATCAAAACGTTTTTAGAACATATTTTAGCTAGCTGGGATGGTCGTCCAAACCAATTAGTCAATTAGTGTATCCAGATGTCTTTCTTTTGTTTATATTCTGCCGGAAAAATAATTTGAAATAGTCTTTTTTTTCCTTCTTCTTCTTCCCCAGGCGTTTTCAAGTTTAAAATTTTCCAACGCGTCTAAAGACGAATGCATTCTTGTGTTCTATTACATTGTGCTCCATCTGTGTTTGAACGCGTCTTCTTGCTCTCTCAGTTTCAGATTCCTGATTAAACGAGTCTAAGTGAAACGAAACTTAAACTCAGTATAGCCGGTAGTTTCCTGCAATACCGGAGGCTGCAGTTTCAGGACTGCAGTTCTGGGACCACAGAGGTTATTTTTATGTAGCTATTAGCAGTTTATACTATTTTATAACACTTATTCAATTTTGCATTTGGATTAGGCTATGCTAGCCTACTCAATCAAGCGACAAACTTTAAAAAACAACAACAAGCTCCGAATGTTGATTCGAATTATTACATTTTAAAATGTGACCATTTTCTCAGAATATCACCTAGTCTTCTATTGTGTTGGTATTAAAGAGGTTTCTCACCAGTTACTTCTGTCCATGTCGCATTTGTGTCGCTCCTGTTTCTGCCAGATATGCTCTGACTGTAAACAGCTCTGCAGCAGCGTTATATGTAGGCTATGCTACGAAGTCTTTCTCCATTTCTCAAAAACGAAACTTACATTAAGGGATACCGTTACTTCGGCGCCTTGACTTTAGATGGACAATTTATTGACCATTGTTTTCCCACGCAGTCGTCATAGGTGCAAATTTACAAAATTTTCAACAAGTCCCTGGTTGTTGTTTCTACCATGTTGGATGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257188 lncRNA downstream 551 2138568 ~ 2138991 (-) True G226660
TU257186 lncRNA downstream 32513 2106730 ~ 2107029 (-) True G226658
TU257185 lncRNA downstream 33098 2106222 ~ 2106444 (-) True G226657
TU257059 lncRNA downstream 35079 2103393 ~ 2104463 (-) True G226543
TU257177 lncRNA downstream 55627 2083378 ~ 2083915 (-) True G226649
TU257189 lncRNA upstream 8859 2151329 ~ 2151649 (-) True G226661
TU257061 lncRNA upstream 59355 2201825 ~ 2204268 (-) True G226545
TU257249 lncRNA upstream 179325 2321795 ~ 2322051 (-) True G226719
TU257325 lncRNA upstream 342674 2485144 ~ 2486677 (-) True CI01000053_02486308_02487685
TU257362 lncRNA upstream 418440 2560910 ~ 2563363 (-) False G226829
CI01000053_02122241_02132642.mRNA mRNA downstream 6755 2121629 ~ 2132787 (-) True CI01000053_02122241_02132642
CI01000053_02109802_02117454.mRNA mRNA downstream 21585 2109171 ~ 2117957 (-) True CI01000053_02109802_02117454
CI01000053_02041737_02066520.mRNA mRNA downstream 72884 2041690 ~ 2066658 (-) True CI01000053_02041737_02066520
CI01000053_02032534_02040859.mRNA mRNA downstream 98105 2032380 ~ 2041437 (-) True CI01000053_02032534_02040859
CI01000053_02029813_02031204.mRNA mRNA downstream 107752 2029813 ~ 2031790 (-) True CI01000053_02029813_02031204
CI01000053_02145248_02149126.mRNA mRNA upstream 2708 2145178 ~ 2149381 (-) True CI01000053_02145248_02149126
CI01000053_02225226_02226481.mRNA mRNA upstream 82740 2225210 ~ 2226481 (-) False CI01000053_02225226_02226481
CI01000053_02241056_02246083.mRNA mRNA upstream 98093 2240563 ~ 2246301 (-) True CI01000053_02241056_02246083
CI01000053_02390840_02400630.mRNA mRNA upstream 248021 2390491 ~ 2401108 (-) True CI01000053_02390840_02400630
CI01000053_02427507_02435639.mRNA mRNA upstream 285037 2427507 ~ 2435639 (-) True CI01000053_02427507_02435639
TU256158 other downstream 672810 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1592674 543647 ~ 546868 (-) True G225574
TU257051 other upstream 74978 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 423422 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 854247 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1407863 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1408189 3552883 ~ 3552971 (-) True G227041

Expression Profile