RNA id: TU257358


Basic Information

Item Value
RNA id TU257358
length 955
RNA type TUCP
GC content 0.41
exon number 3
gene id G226826
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2565892 ~ 2567072 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGCCTGCTTTTATTTTATTGGCAAATTTTAATTTACATGCTTGGTGACATTTAATACCTCCCATTATTTGTACAAAGAACAATACTAAGACACAATTGCCAGACAATAGTGCCTGACACAGTGGGGGAAAGAAAATCTAAATATAATGCTCATTTTTAAACATTCAAGCAGAAACAACATCTTTCACTTTTGAAGCTGAAAAGCAAAAATCAGCAGCATCTGAAGACATTATTGAAATGATATAGAAGATAACCACAGATACAAAAATATCAGAAAATATTTTGTGTAAAAAGTGCCATAGTGTTAAAATTACAAAGCATTAATCAGACAGGCTGCAAAAATGGCATAAAACAAGATGCTTCCCATGACATCTGAAAACAACTGCTCCACAAGCAGAAGATCCTCAGTCCATTTGCTTTTGTATTGCACTATGTAGTAAGTACAGTAAAACAGTGGTCAACAAACTAATGTCAAGTAATTGTGGGACACTGTGAGGATTTAATCCTGTATGTGGTTCATTTAAATATGCTGAAATGATTTATGGCACAATAGGAGCACATAAAAACAATACAGCACTCATATTAGACAGTAGAATGACAATCTCATCTTCTCATTGCCTGCAGTCATGGCTTGACCATGGTGCTGGTTTTTGTGTCCACACCCAGCACGGACGTTTAAAGGCACCACTGGTGAAGATGACTTGGTTTGTTTATCATAGTTCCCCCTCCTTTCCCACTGACGGGGACTCAGCAAGGTACAGCAGTGCTTCTTTGAGAACAGGAGTTTCACTTGCGGCGACTGAAGATGCTCTTTTTGCTGGAGCTCTTGTCGGCGGTGCTGAAGCCGATTAAAAGTCTTGCCTTCTCGTCCTCCACCTGCTGCTGGAGGCTGCTGTCTGCTTTCCCATCTGTCGCTTTACCCCGAGACTCGGAGCCTGAGGCTGGTTTCAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257362 lncRNA downstream 2529 2560910 ~ 2563363 (-) False G226829
TU257361 lncRNA downstream 2529 2562432 ~ 2563363 (-) True G226829
TU257325 lncRNA downstream 79215 2485144 ~ 2486677 (-) True CI01000053_02486308_02487685
TU257249 lncRNA downstream 243841 2321795 ~ 2322051 (-) True G226719
TU257061 lncRNA downstream 361624 2201825 ~ 2204268 (-) True G226545
TU257366 lncRNA upstream 401 2567473 ~ 2567729 (-) True G226833
TU257367 lncRNA upstream 1613 2568685 ~ 2568928 (-) True G226834
TU257403 lncRNA upstream 26248 2593320 ~ 2595466 (-) True G226862
TU257388 lncRNA upstream 145115 2712187 ~ 2715746 (-) True G226847
TU257385 lncRNA upstream 166020 2733092 ~ 2738128 (-) True G226845
CI01000053_02533620_02536887.mRNA mRNA downstream 28052 2533593 ~ 2537840 (-) True CI01000053_02533620_02536887
CI01000053_02497603_02508436.mRNA mRNA downstream 57169 2497590 ~ 2508723 (-) True CI01000053_02497603_02508436
CI01000053_02486308_02487685.mRNA mRNA downstream 77862 2485433 ~ 2488030 (-) False CI01000053_02486308_02487685
CI01000053_02449164_02455151.mRNA mRNA downstream 110741 2449016 ~ 2455151 (-) True CI01000053_02449164_02455151
CI01000053_02427507_02435639.mRNA mRNA downstream 130253 2427507 ~ 2435639 (-) True CI01000053_02427507_02435639
CI01000053_02694095_02694625.mRNA mRNA upstream 126326 2693398 ~ 2696172 (-) True CI01000053_02694095_02694625
CI01000053_02716472_02737494.mRNA mRNA upstream 148940 2716012 ~ 2737577 (-) False CI01000053_02716472_02737494
CI01000053_02739707_02746533.mRNA mRNA upstream 172422 2739494 ~ 2746582 (-) True CI01000053_02739707_02746533
CI01000053_02753283_02763401.mRNA mRNA upstream 186006 2753078 ~ 2763797 (-) True CI01000053_02753283_02763401
CI01000053_02817187_02856529.mRNA mRNA upstream 248794 2815866 ~ 2856648 (-) True CI01000053_02817187_02856529
TU257051 other downstream 328496 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 1099160 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2019024 543647 ~ 546868 (-) True G225574
TU257528 other upstream 429645 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 983261 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 983587 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 983587 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 1520165 4087237 ~ 4087740 (-) True G227604

Expression Profile