RNA id: TU257448


Basic Information

Item Value
RNA id TU257448
length 241
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G226906
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2765113 ~ 2765353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGACCTGAACAGCGCACGTTGCTATCTGTGTTTAAACTAAACTCATTTAAGCCTTACTAATTTAAACATTCAAGAGCAAGATGCGAAAAAGAACTTGCGCAAGCTGTGAGAAGATTTGTGTGTGCACTCATCCGAAGCGCGCACGCCCTTTATCTCAGACAGCGTGGAAATATGGAGTTCTCTTTCAAGTCATGCGTTTGAACGGACAAATTCACACAAAAATTGTCAACATGCCCGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257389 lncRNA downstream 13921 2748578 ~ 2751192 (-) True G226848
TU257385 lncRNA downstream 26985 2733092 ~ 2738128 (-) True G226845
TU257384 lncRNA downstream 26985 2733398 ~ 2738128 (-) True G226845
TU257388 lncRNA downstream 49367 2712187 ~ 2715746 (-) True G226847
TU257403 lncRNA downstream 169647 2593320 ~ 2595466 (-) True G226862
TU257470 lncRNA upstream 1899 2767252 ~ 2767502 (-) True G226919
TU257476 lncRNA upstream 12622 2777975 ~ 2778676 (-) True G226925
TU257465 lncRNA upstream 76270 2841623 ~ 2846182 (-) True G226914
TU257509 lncRNA upstream 192981 2958334 ~ 2961225 (-) True G226946
TU257532 lncRNA upstream 271242 3036595 ~ 3046469 (-) True G226967
CI01000053_02753283_02763401.mRNA mRNA downstream 1316 2753078 ~ 2763797 (-) True CI01000053_02753283_02763401
CI01000053_02739707_02746533.mRNA mRNA downstream 18531 2739494 ~ 2746582 (-) True CI01000053_02739707_02746533
CI01000053_02716472_02737494.mRNA mRNA downstream 27536 2716012 ~ 2737577 (-) False CI01000053_02716472_02737494
CI01000053_02694095_02694625.mRNA mRNA downstream 68941 2693398 ~ 2696172 (-) True CI01000053_02694095_02694625
CI01000053_02533620_02536887.mRNA mRNA downstream 227273 2533593 ~ 2537840 (-) True CI01000053_02533620_02536887
CI01000053_02817187_02856529.mRNA mRNA upstream 50513 2815866 ~ 2856648 (-) True CI01000053_02817187_02856529
CI01000053_02862161_02873752.mRNA mRNA upstream 96378 2861731 ~ 2873752 (-) True CI01000053_02862161_02873752
CI01000053_02905181_02934126.mRNA mRNA upstream 139322 2904675 ~ 2934126 (-) True CI01000053_02905181_02934126
CI01000053_02968381_02979969.mRNA mRNA upstream 202870 2968223 ~ 2980046 (-) True CI01000053_02968381_02979969
CI01000053_03013700_03026612.mRNA mRNA upstream 248347 3013700 ~ 3026612 (-) True CI01000053_03013700_03026612
TU257358 other downstream 198041 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 527717 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 1298381 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2218245 543647 ~ 546868 (-) True G225574
TU257528 other upstream 231364 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 784980 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 785306 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 785306 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 1321884 4087237 ~ 4087740 (-) True G227604

Expression Profile