RNA id: TU257532


Basic Information

Item Value
RNA id TU257532
length 342
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G226967
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3036595 ~ 3046469 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTCCTCCTCAGAACACCACCACTGTCCAGTTCAACCCTGTATGATCGTTTGTTAACCGGTTCCAGAACTGTTGCTTTCTGCCAAACCTTTTGTGCCTGTGTTAGTTGTACTCTCACTTGGTCACCTGGTTTCAGGATGTTCATGTCTTTTGTGTGTCTGTTGTAGTACATTTCCTGTCGTCTTTGATTTAGTCTCAGTCCTTGTGTGGTGTCTACTACTTTTGGCTTCAACAGATTGCTGTGTGTTGGGAGGAGCGTACGTGTCCTCCTGCTTAACAGTCTTTGAGCAGGGCTTGCATTCAGACCCTGCGAGGGAGTGTTTCTGTGATCTAATATCGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257509 lncRNA downstream 75370 2958334 ~ 2961225 (-) True G226946
TU257465 lncRNA downstream 190413 2841623 ~ 2846182 (-) True G226914
TU257476 lncRNA downstream 257919 2777975 ~ 2778676 (-) True G226925
TU257470 lncRNA downstream 269093 2767252 ~ 2767502 (-) True G226919
TU257448 lncRNA downstream 271242 2765113 ~ 2765353 (-) True G226906
TU257574 lncRNA upstream 134876 3181345 ~ 3181577 (-) True G227003
TU257575 lncRNA upstream 135534 3182003 ~ 3182298 (-) True G227004
TU257620 lncRNA upstream 175769 3222238 ~ 3308690 (-) True G227042
TU257580 lncRNA upstream 187958 3234427 ~ 3234738 (-) True G227008
TU257638 lncRNA upstream 349299 3395768 ~ 3490909 (-) True G227049
CI01000053_03013700_03026612.mRNA mRNA downstream 9983 3013700 ~ 3026612 (-) True CI01000053_03013700_03026612
CI01000053_02968381_02979969.mRNA mRNA downstream 56549 2968223 ~ 2980046 (-) True CI01000053_02968381_02979969
CI01000053_02905181_02934126.mRNA mRNA downstream 102469 2904675 ~ 2934126 (-) True CI01000053_02905181_02934126
CI01000053_02862161_02873752.mRNA mRNA downstream 162843 2861731 ~ 2873752 (-) True CI01000053_02862161_02873752
CI01000053_02817187_02856529.mRNA mRNA downstream 179947 2815866 ~ 2856648 (-) True CI01000053_02817187_02856529
CI01000053_03072131_03076683.mRNA mRNA upstream 25520 3071989 ~ 3076683 (-) True CI01000053_03072131_03076683
CI01000053_03120615_03122486.mRNA mRNA upstream 73466 3119935 ~ 3122486 (-) True CI01000053_03120615_03122486
CI01000053_03142995_03145565.mRNA mRNA upstream 96526 3142995 ~ 3145565 (-) True CI01000053_03142995_03145565
CI01000053_03304977_03312227.mRNA mRNA upstream 257905 3304374 ~ 3312639 (-) True CI01000053_03304977_03312227
CI01000053_03403259_03403534.mRNA mRNA upstream 356568 3403037 ~ 3404029 (-) True CI01000053_03403259_03403534
TU257528 other downstream 39327 2996717 ~ 2997268 (-) True G226963
TU257358 other downstream 469523 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 799199 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 1569863 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2489727 543647 ~ 546868 (-) True G225574
TU257615 other upstream 503864 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 504190 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 504190 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 1040768 4087237 ~ 4087740 (-) True G227604
TU259481 other upstream 2738014 5784483 ~ 5787690 (-) True G228651

Expression Profile