RNA id: TU257574


Basic Information

Item Value
RNA id TU257574
length 233
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G227003
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3181345 ~ 3181577 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAAAAGAAAATGTATTTACTTGTTTTATTTTGGTTAATGCTTGAGGAGCTGGTTTATGTACAACAGATATCTGTTACAGAGACAAAGGAGGAGGATATTAAGAAGAACAAAGTTTAAAACAAAAACAAGCATGAAACTACTTACATCTAAACACATAGCTGTATGTACATTTGCCGACGCCGCCATTTATTTTTTATTTTTTTCAAATAAATGATGGTTGTTAACAGCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257532 lncRNA downstream 134876 3036595 ~ 3046469 (-) True G226967
TU257509 lncRNA downstream 220120 2958334 ~ 2961225 (-) True G226946
TU257465 lncRNA downstream 335163 2841623 ~ 2846182 (-) True G226914
TU257476 lncRNA downstream 402669 2777975 ~ 2778676 (-) True G226925
TU257470 lncRNA downstream 413843 2767252 ~ 2767502 (-) True G226919
TU257575 lncRNA upstream 426 3182003 ~ 3182298 (-) True G227004
TU257620 lncRNA upstream 40661 3222238 ~ 3308690 (-) True G227042
TU257580 lncRNA upstream 52850 3234427 ~ 3234738 (-) True G227008
TU257638 lncRNA upstream 214191 3395768 ~ 3490909 (-) True G227049
TU257802 lncRNA upstream 223571 3405148 ~ 3428322 (-) True G227174
CI01000053_03142995_03145565.mRNA mRNA downstream 35780 3142995 ~ 3145565 (-) True CI01000053_03142995_03145565
CI01000053_03120615_03122486.mRNA mRNA downstream 58859 3119935 ~ 3122486 (-) True CI01000053_03120615_03122486
CI01000053_03072131_03076683.mRNA mRNA downstream 104662 3071989 ~ 3076683 (-) True CI01000053_03072131_03076683
CI01000053_03013700_03026612.mRNA mRNA downstream 154733 3013700 ~ 3026612 (-) True CI01000053_03013700_03026612
CI01000053_02968381_02979969.mRNA mRNA downstream 201299 2968223 ~ 2980046 (-) True CI01000053_02968381_02979969
CI01000053_03304977_03312227.mRNA mRNA upstream 122797 3304374 ~ 3312639 (-) True CI01000053_03304977_03312227
CI01000053_03403259_03403534.mRNA mRNA upstream 221460 3403037 ~ 3404029 (-) True CI01000053_03403259_03403534
CI01000053_03456147_03457909.mRNA mRNA upstream 274458 3456035 ~ 3458199 (-) True CI01000053_03456147_03457909
CI01000053_03499011_03502122.mRNA mRNA upstream 316821 3498398 ~ 3502263 (-) True CI01000053_03499011_03502122
CI01000053_03551506_03551965.mRNA mRNA upstream 369741 3551318 ~ 3552196 (-) False CI01000053_03551506_03551965
TU257528 other downstream 184077 2996717 ~ 2997268 (-) True G226963
TU257358 other downstream 614273 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 943949 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 1714613 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2634477 543647 ~ 546868 (-) True G225574
TU257615 other upstream 368756 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 369082 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 369082 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 905660 4087237 ~ 4087740 (-) True G227604
TU259481 other upstream 2602906 5784483 ~ 5787690 (-) True G228651

Expression Profile