RNA id: TU257638



Basic Information


Item Value
RNA id TU257638
length 1707
lncRNA type read_through
GC content 0.37
exon number 2
gene id G227049
representative True

Chromosome Information


Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3395768 ~ 3490909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGATTTAAAAACTGATACAGCTCTGGGATTTTAATCACGCACACAAAAATGCAATGCAATTCTACTAAAAAATATATAAAAAATTTCTAAAATGTAATGTAATGTAATTCAGAACAGAAAAATAAAAAAGCATAGATCATCTTGGACTAACAAAACAGTAAAACAGAAGGAGATAACATTCTTAAAGAATCTTACAATTTCAGGCCATGCAGGTTCATTTTTATGTTGCATACAGTGTCTGTTATCATTGTGTACCTATATTACAAATGTCACAGTCATGTTCTGTTTGTTTTGATTTTCATTCATCACATGTGATCCTTTGTTCTAAGTTCCCGCCACTCATCAGTCACCATGGACACTAACTCACCATCACAGCTGTGCATCATTAGTTAATCTACTCTGTGTATATCTGTTCCTGCTTGTGTTCAGTTCAGTGTCTGGTTTTGTTCCAGTTGTGTGTAACCCTGCCTGTTGGAACTTTCTTATTAAAACCTTGTATTGGATAGTTACTCATCTTTGTCTGCCTGCACACCATTCATTACAACAAGTCAAGTCACCTTTATTTTATATAGCACTAAAGCTACAATATGTAAGATTTCTGCAGTAAAATATCCAAAAACCACTAGGCCAGTGTTATATATTTTGTTCAGTTGAGTACTTACAATATGTTTCCAACTATTTGTAAATCATGAGAAAATCGCGATTTTAACCAAAGATATGGGACATGTCTGGGAGTTGCCTGTCAATAGCGTCATATCCGCGTTACCCTCAGTTTCCAGTTTTATTTTGTAGAAACCATGGAAACACTGAAGACGCTTTAATATATTACATGTTTTATTAGACAAAGGAACAACTGTTTGGTTACATTTATAGACAGAAAATTTATAGACATTTATTATCAACACAAGCCACCCAGCATTTATTAATATAATATTCTAAAATCGATCTAGCTTACTGCAGTGCAACAAGTGTCTTACACAGCCGCCGAGTGAACGCACAGTGTAACGTCATAACATCATTTTCAACACAGTTCAATGTCTCTAATATCATAAACAGCGCTGTGTTACCTCGTACGCTTGACCGGAAGAAGCGGCACCAGCGACTACGGCATAATAAAATTTCCGCTGCTTGGGTGCCGTGTGTCACGCTCGTCTCTCATTAGCAATCTCTCCAGCAGCCTCGTTCAGCTCCAACATCACTGAGCCCTGCTCGGCGTCATCAAGCTACATCTTTGTTTTGAATAGGCGACCTCTAGCGGCAAAAAATTTACATATTGTAGCTTTAATACAAACAATACAGATTGTTTCAAAGCAGCATTACAGTGATAAACAAGAAAAGAACGATTCAATACGATTCAACCCAAACTCCTTCAGGTGACAGAAATGGAGAAAAAAACCTTGGGAGAAGCCAGCCTCAGTCGGGGGGCCAGTTCTCCTCTGGCTAACGAACAAACATTATATGATTATGATTCAGGCTGCATCACAAGTCAGAAGTCAGATTGTGGATATTGGTAGCATTCAAAATATTTGATCCAGTTCCTTCTGCTTCATGATTGGATTCTTAATGCTGGTGTGGAGACGAAGCTGGTCATAGGGGTCTGTGCAGAGTTCCTTTGTCATTTTAATCAAATATCATTGTGAAAATCATTATCATAGCATTGCCCAAATAGAATCTACAAAGCAAATGCTGTTTTTTTTTTTTGTTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257620 lncRNA downstream 87078 3222238 ~ 3308690 (-) True G227042
TU257580 lncRNA downstream 161030 3234427 ~ 3234738 (-) True G227008
TU257575 lncRNA downstream 213470 3182003 ~ 3182298 (-) True G227004
TU257574 lncRNA downstream 214191 3181345 ~ 3181577 (-) True G227003
TU257532 lncRNA downstream 349299 3036595 ~ 3046469 (-) True G226967
TU257863 lncRNA upstream 49847 3540756 ~ 3541322 (-) True G227225
TU257666 lncRNA upstream 112989 3603898 ~ 3606489 (-) True G227069
TU257626 lncRNA upstream 126699 3617608 ~ 3620177 (-) True G227046
TU257874 lncRNA upstream 144808 3635717 ~ 3636139 (-) False G227236
TU257876 lncRNA upstream 144808 3635717 ~ 3636283 (-) True G227236
CI01000053_03304977_03312227.mRNA mRNA downstream 83129 3304374 ~ 3312639 (-) True CI01000053_03304977_03312227
CI01000053_03142995_03145565.mRNA mRNA downstream 250203 3142995 ~ 3145565 (-) True CI01000053_03142995_03145565
CI01000053_03120615_03122486.mRNA mRNA downstream 273282 3119935 ~ 3122486 (-) True CI01000053_03120615_03122486
CI01000053_03072131_03076683.mRNA mRNA downstream 319085 3071989 ~ 3076683 (-) True CI01000053_03072131_03076683
CI01000053_03013700_03026612.mRNA mRNA downstream 369156 3013700 ~ 3026612 (-) True CI01000053_03013700_03026612
CI01000053_03499011_03502122.mRNA mRNA upstream 7489 3498398 ~ 3502263 (-) True CI01000053_03499011_03502122
CI01000053_03551506_03551965.mRNA mRNA upstream 60409 3551318 ~ 3552196 (-) False CI01000053_03551506_03551965
CI01000053_03558891_03566444.mRNA mRNA upstream 67874 3558783 ~ 3569352 (-) True CI01000053_03558891_03566444
CI01000053_03592810_03602102.mRNA mRNA upstream 101746 3592655 ~ 3602437 (-) True CI01000053_03592810_03602102
CI01000053_03620673_03622682.mRNA mRNA upstream 129331 3620240 ~ 3622685 (-) True CI01000053_03620673_03622682
TU257528 other downstream 398500 2996717 ~ 2997268 (-) True G226963
TU257358 other downstream 828696 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 1158372 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 1929036 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2848900 543647 ~ 546868 (-) True G225574
TU257615 other upstream 59424 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 59750 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 59750 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 596328 4087237 ~ 4087740 (-) True G227604
TU259481 other upstream 2293574 5784483 ~ 5787690 (-) True G228651

Expression Profile