RNA id: TU257863


Basic Information

Item Value
RNA id TU257863
length 262
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G227225
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3540756 ~ 3541322 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTCAAACATTCACTGATGCTCCAGAAGGAAACACGATGCATTAAGAGTCGGGGGGTGAAAACTTTTGAACAGGATGAAGAGGTCCAAATTTTTCTTATTTCACTTGAATATCAATTTTTTTCATTTAGTATTGCCCTTCGGAAGCAACAGAAGATACTTTCATGTTTCCCGGAAGACAAATTAAATACAATTTACCTTGATCTTCAAATTCCAAATGTTTTCACCCCCCATCTATTAATGCATCATGTTTTTTTCTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257638 lncRNA downstream 49847 3395768 ~ 3490909 (-) True G227049
TU257802 lncRNA downstream 112434 3405148 ~ 3428322 (-) True G227174
TU257815 lncRNA downstream 119940 3413501 ~ 3420816 (-) True G227184
TU257620 lncRNA downstream 232066 3222238 ~ 3308690 (-) True G227042
TU257580 lncRNA downstream 306018 3234427 ~ 3234738 (-) True G227008
TU257666 lncRNA upstream 62576 3603898 ~ 3606489 (-) True G227069
TU257626 lncRNA upstream 76286 3617608 ~ 3620177 (-) True G227046
TU257874 lncRNA upstream 94395 3635717 ~ 3636139 (-) False G227236
TU257876 lncRNA upstream 94395 3635717 ~ 3636283 (-) True G227236
TU257641 lncRNA upstream 165217 3706539 ~ 3707610 (-) True G227051
CI01000053_03499011_03502122.mRNA mRNA downstream 38493 3498398 ~ 3502263 (-) True CI01000053_03499011_03502122
CI01000053_03456147_03457909.mRNA mRNA downstream 82557 3456035 ~ 3458199 (-) True CI01000053_03456147_03457909
CI01000053_03403259_03403534.mRNA mRNA downstream 136727 3403037 ~ 3404029 (-) True CI01000053_03403259_03403534
CI01000053_03304977_03312227.mRNA mRNA downstream 228117 3304374 ~ 3312639 (-) True CI01000053_03304977_03312227
CI01000053_03142995_03145565.mRNA mRNA downstream 395191 3142995 ~ 3145565 (-) True CI01000053_03142995_03145565
CI01000053_03551506_03551965.mRNA mRNA upstream 9996 3551318 ~ 3552196 (-) False CI01000053_03551506_03551965
CI01000053_03558891_03566444.mRNA mRNA upstream 17461 3558783 ~ 3569352 (-) True CI01000053_03558891_03566444
CI01000053_03592810_03602102.mRNA mRNA upstream 51333 3592655 ~ 3602437 (-) True CI01000053_03592810_03602102
CI01000053_03620673_03622682.mRNA mRNA upstream 78918 3620240 ~ 3622685 (-) True CI01000053_03620673_03622682
CI01000053_03625343_03653163.mRNA mRNA upstream 83648 3624970 ~ 3653334 (-) True CI01000053_03625343_03653163
TU257528 other downstream 543488 2996717 ~ 2997268 (-) True G226963
TU257358 other downstream 973684 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 1303360 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 2074024 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2993888 543647 ~ 546868 (-) True G225574
TU257615 other upstream 9011 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 9337 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 9337 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 545915 4087237 ~ 4087740 (-) True G227604
TU259481 other upstream 2243161 5784483 ~ 5787690 (-) True G228651

Expression Profile