RNA id: TU258273


Basic Information

Item Value
RNA id TU258273
length 472
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G227578
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3998439 ~ 4004359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTGTTTCCTGAGGTATAGTCTTGTTTGGAAGGTTAAACGATAGAGACTGAAGGAGGTCTAGTGCTTGTAACTGCATGGGTTCCTGAAGTCTCCGAATTTCCTCTGTCAGGTTTGTGGAGGAAGGTCGAGGCATCTCTGTGGTTCTCTGTAACTGAGAATCTGTCGCAGCAGTGACACCGATGGATGCTTCGGTTGGGAAGGTGGACATCACATTCTCACCAATGGCTGCTTTGTAGTACATCCAGATATCCTGAGGGGACAGGGCTCTCTCCCAAATCACAAACTCATCGAAGGCACCCGTGGCATAGTGGCCGTAACTCCCGGTGTTTCCTGTGCCAATGACCAGATCGGCATAGGGATCACCATAGTTATGGGAAACACTTCCTGTGGGGTCTCCGGTGCTGTATGTTCCATTAATGTAGACCTTTAATCCCTCCGTTTGGGTCCATGTGAAGAGCACATGTGTCCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258265 lncRNA downstream 8227 3985992 ~ 3990212 (-) True G227573
TU258255 lncRNA downstream 32941 3963730 ~ 3965498 (-) True G227563
TU257645 lncRNA downstream 252816 3734124 ~ 3745623 (-) True G227053
TU257668 lncRNA downstream 268728 3729478 ~ 3729711 (-) True G227071
TU257641 lncRNA downstream 290829 3706539 ~ 3707610 (-) True G227051
TU258277 lncRNA upstream 1965 4006324 ~ 4039233 (-) True G227581
TU258306 lncRNA upstream 80688 4085047 ~ 4085957 (-) True G227605
TU258363 lncRNA upstream 123863 4128222 ~ 4128480 (-) True G227650
TU258334 lncRNA upstream 216905 4221264 ~ 4255705 (-) False G227622
TU258319 lncRNA upstream 230159 4234518 ~ 4236587 (-) True G227617
CI01000053_03823296_03825234.mRNA mRNA downstream 173111 3823094 ~ 3825328 (-) True CI01000053_03823296_03825234
CI01000053_03696522_03699590.mRNA mRNA downstream 298740 3696458 ~ 3699699 (-) True CI01000053_03696522_03699590
CI01000053_03665103_03666630.mRNA mRNA downstream 330739 3664590 ~ 3667700 (-) True CI01000053_03665103_03666630
CI01000053_03625343_03653163.mRNA mRNA downstream 345105 3624970 ~ 3653334 (-) True CI01000053_03625343_03653163
CI01000053_03620673_03622682.mRNA mRNA downstream 375754 3620240 ~ 3622685 (-) True CI01000053_03620673_03622682
CI01000053_04276080_04288879.mRNA mRNA upstream 271681 4276040 ~ 4288879 (-) True CI01000053_04276080_04288879
CI01000053_04415119_04415646.mRNA mRNA upstream 410702 4415061 ~ 4415646 (-) True CI01000053_04415119_04415646
CI01000053_04423076_04430502.mRNA mRNA upstream 418717 4423076 ~ 4430502 (-) True CI01000053_04423076_04430502
CI01000053_04450920_04470110.mRNA mRNA upstream 446485 4450844 ~ 4470110 (-) True CI01000053_04450920_04470110
CI01000053_04494346_04508379.mRNA mRNA upstream 489963 4494322 ~ 4508640 (-) True CI01000053_04494346_04508379
TU257616 other downstream 445468 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 446461 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 446461 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 1001171 2996717 ~ 2997268 (-) True G226963
TU257358 other downstream 1431367 2565892 ~ 2567072 (-) True G226826
TU258305 other upstream 82878 4087237 ~ 4087740 (-) True G227604
TU259481 other upstream 1780124 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 1927233 5931592 ~ 5932241 (-) True G228750

Expression Profile