Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU258277 |
| length | 935 |
| lncRNA type | read_through |
| GC content | 0.49 |
| exon number | 10 |
| gene id | G227581 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 4006324 ~ 4039233 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU258273 | lncRNA | downstream | 1965 | 3998439 ~ 4004359 (-) | True | G227578 |
| TU258265 | lncRNA | downstream | 16112 | 3985992 ~ 3990212 (-) | True | G227573 |
| TU258255 | lncRNA | downstream | 40826 | 3963730 ~ 3965498 (-) | True | G227563 |
| TU257645 | lncRNA | downstream | 260701 | 3734124 ~ 3745623 (-) | True | G227053 |
| TU257668 | lncRNA | downstream | 276613 | 3729478 ~ 3729711 (-) | True | G227071 |
| TU258306 | lncRNA | upstream | 45814 | 4085047 ~ 4085957 (-) | True | G227605 |
| TU258363 | lncRNA | upstream | 88989 | 4128222 ~ 4128480 (-) | True | G227650 |
| TU258334 | lncRNA | upstream | 182031 | 4221264 ~ 4255705 (-) | False | G227622 |
| TU258319 | lncRNA | upstream | 195285 | 4234518 ~ 4236587 (-) | True | G227617 |
| TU258320 | lncRNA | upstream | 205525 | 4244758 ~ 4246698 (-) | True | G227618 |
| CI01000053_03823296_03825234.mRNA | mRNA | downstream | 180996 | 3823094 ~ 3825328 (-) | True | CI01000053_03823296_03825234 |
| CI01000053_03696522_03699590.mRNA | mRNA | downstream | 306625 | 3696458 ~ 3699699 (-) | True | CI01000053_03696522_03699590 |
| CI01000053_03665103_03666630.mRNA | mRNA | downstream | 338624 | 3664590 ~ 3667700 (-) | True | CI01000053_03665103_03666630 |
| CI01000053_03625343_03653163.mRNA | mRNA | downstream | 352990 | 3624970 ~ 3653334 (-) | True | CI01000053_03625343_03653163 |
| CI01000053_03620673_03622682.mRNA | mRNA | downstream | 383639 | 3620240 ~ 3622685 (-) | True | CI01000053_03620673_03622682 |
| CI01000053_04276080_04288879.mRNA | mRNA | upstream | 236807 | 4276040 ~ 4288879 (-) | True | CI01000053_04276080_04288879 |
| CI01000053_04415119_04415646.mRNA | mRNA | upstream | 375828 | 4415061 ~ 4415646 (-) | True | CI01000053_04415119_04415646 |
| CI01000053_04423076_04430502.mRNA | mRNA | upstream | 383843 | 4423076 ~ 4430502 (-) | True | CI01000053_04423076_04430502 |
| CI01000053_04450920_04470110.mRNA | mRNA | upstream | 411611 | 4450844 ~ 4470110 (-) | True | CI01000053_04450920_04470110 |
| CI01000053_04494346_04508379.mRNA | mRNA | upstream | 455089 | 4494322 ~ 4508640 (-) | True | CI01000053_04494346_04508379 |
| TU257616 | other | downstream | 453353 | 3552883 ~ 3552971 (-) | True | G227041 |
| TU257615 | other | downstream | 454346 | 3550333 ~ 3551978 (-) | False | CI01000053_03551506_03551965 |
| TU257617 | other | downstream | 454346 | 3550659 ~ 3551978 (-) | True | CI01000053_03551506_03551965 |
| TU257528 | other | downstream | 1009056 | 2996717 ~ 2997268 (-) | True | G226963 |
| TU257358 | other | downstream | 1439252 | 2565892 ~ 2567072 (-) | True | G226826 |
| TU258305 | other | upstream | 48004 | 4087237 ~ 4087740 (-) | True | G227604 |
| TU259481 | other | upstream | 1745250 | 5784483 ~ 5787690 (-) | True | G228651 |
| TU259584 | other | upstream | 1892359 | 5931592 ~ 5932241 (-) | True | G228750 |
