RNA id: TU258305


Basic Information

Item Value
RNA id TU258305
length 398
RNA type TUCP
GC content 0.42
exon number 2
gene id G227604
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 4087237 ~ 4087740 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAGGACAGGCCCTCCATCAGCAGTAAGGCTTTATGGTATCGCTCTACAGAGGTTTCTCCATGATGAAACATCTCGTCCAGCGCTGCCGTCTGTACCATCTGAACGGTGTGTGTGTAGATGAGTCTCTCAGCAGTAATGTTGTTCATGCGGTCCATCAGTCTTTGCTTGCTGCTGAAGAAGAGCTGGAGTTTCTCAGTGAGAGAACGGCAGGAGTTCACACACCCCTTATACATCTCATTAAGCTTACGTACTACTGCAAGAGCAACACACACACAAACAACATACCAATCAGAATTAATGTCTTAATTACAGTATGTCCATTTATTAATGATATATGGTTGCATAATTTAGAGATTTTTTGGTCCCACTTTATATTAAAGCAACACCATGGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258306 lncRNA downstream 1280 4085047 ~ 4085957 (-) True G227605
TU258277 lncRNA downstream 48004 4006324 ~ 4039233 (-) True G227581
TU258273 lncRNA downstream 82878 3998439 ~ 4004359 (-) True G227578
TU258265 lncRNA downstream 97025 3985992 ~ 3990212 (-) True G227573
TU258255 lncRNA downstream 121739 3963730 ~ 3965498 (-) True G227563
TU258363 lncRNA upstream 40482 4128222 ~ 4128480 (-) True G227650
TU258334 lncRNA upstream 133524 4221264 ~ 4255705 (-) False G227622
TU258319 lncRNA upstream 146778 4234518 ~ 4236587 (-) True G227617
TU258320 lncRNA upstream 157018 4244758 ~ 4246698 (-) True G227618
TU258330 lncRNA upstream 164723 4252463 ~ 4255705 (-) False G227622
CI01000053_03823296_03825234.mRNA mRNA downstream 261909 3823094 ~ 3825328 (-) True CI01000053_03823296_03825234
CI01000053_03696522_03699590.mRNA mRNA downstream 387538 3696458 ~ 3699699 (-) True CI01000053_03696522_03699590
CI01000053_03665103_03666630.mRNA mRNA downstream 419537 3664590 ~ 3667700 (-) True CI01000053_03665103_03666630
CI01000053_03625343_03653163.mRNA mRNA downstream 433903 3624970 ~ 3653334 (-) True CI01000053_03625343_03653163
CI01000053_03620673_03622682.mRNA mRNA downstream 464552 3620240 ~ 3622685 (-) True CI01000053_03620673_03622682
CI01000053_04276080_04288879.mRNA mRNA upstream 188300 4276040 ~ 4288879 (-) True CI01000053_04276080_04288879
CI01000053_04415119_04415646.mRNA mRNA upstream 327321 4415061 ~ 4415646 (-) True CI01000053_04415119_04415646
CI01000053_04423076_04430502.mRNA mRNA upstream 335336 4423076 ~ 4430502 (-) True CI01000053_04423076_04430502
CI01000053_04450920_04470110.mRNA mRNA upstream 363104 4450844 ~ 4470110 (-) True CI01000053_04450920_04470110
CI01000053_04494346_04508379.mRNA mRNA upstream 406582 4494322 ~ 4508640 (-) True CI01000053_04494346_04508379
TU257616 other downstream 534266 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 535259 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 535259 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 1089969 2996717 ~ 2997268 (-) True G226963
TU257358 other downstream 1520165 2565892 ~ 2567072 (-) True G226826
TU259481 other upstream 1696743 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 1843852 5931592 ~ 5932241 (-) True G228750

Expression Profile