RNA id: TU258651


Basic Information

Item Value
RNA id TU258651
length 210
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G227917
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5014460 ~ 5014669 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACATACCTGTTCATTTTTGTTACATTTTTATTGAATTTTAATGTTATGTGTAACAAAATGTCCTCCTCTGTGTTCAGGTTTGACTGTAATAAAATGAATGCAAAAACTGACACTTCAAATCAACATTTCAAACAAAAAACATCTAAACCTTGACAAGTAGTCTTTGAGAATGTCTAAGTATAAATCCAAATCCACAACTTAATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258634 lncRNA upstream 18512 4995353 ~ 4995948 (+) True G227901
TU258630 lncRNA upstream 20975 4993269 ~ 4993485 (+) True G227897
TU258624 lncRNA upstream 49038 4965096 ~ 4965422 (+) True G227891
TU258583 lncRNA upstream 194581 4819576 ~ 4819879 (+) True G227851
TU258567 lncRNA upstream 230676 4783566 ~ 4783784 (+) True G227835
TU258658 lncRNA downstream 22961 5037630 ~ 5037844 (+) True G227924
TU258666 lncRNA downstream 39241 5053910 ~ 5054124 (+) True G227932
TU258669 lncRNA downstream 43660 5058329 ~ 5058624 (+) True G227935
TU258708 lncRNA downstream 98184 5112853 ~ 5113094 (+) True G227973
TU258709 lncRNA downstream 99908 5114577 ~ 5114803 (+) True G227974
CI01000053_04887190_04967327.mRNA mRNA upstream 47133 4887190 ~ 4967327 (+) True CI01000053_04887190_04967327
CI01000053_04725274_04746721.mRNA mRNA upstream 267092 4724511 ~ 4747368 (+) True CI01000053_04725274_04746721
CI01000053_04714218_04716351.mRNA mRNA upstream 297926 4713891 ~ 4716534 (+) True CI01000053_04714218_04716351
CI01000053_04668583_04699797.mRNA mRNA upstream 312782 4668583 ~ 4701678 (+) True CI01000053_04668583_04699797
CI01000053_04399676_04409215.mRNA mRNA upstream 605245 4399676 ~ 4409215 (+) True CI01000053_04399676_04409215
CI01000053_05187818_05191994.mRNA mRNA downstream 173024 5187693 ~ 5192234 (+) True CI01000053_05187818_05191994
CI01000053_05214150_05219071.mRNA mRNA downstream 199481 5214150 ~ 5220330 (+) True CI01000053_05214150_05219071
CI01000053_05235005_05242054.mRNA mRNA downstream 219038 5233707 ~ 5242337 (+) True CI01000053_05235005_05242054
CI01000053_05253537_05256485.mRNA mRNA downstream 238824 5253493 ~ 5256998 (+) True CI01000053_05253537_05256485
CI01000053_05267143_05269915.mRNA mRNA downstream 252430 5267099 ~ 5270434 (+) True CI01000053_05267143_05269915
TU257989 other upstream 598867 4414951 ~ 4415593 (+) True G227317
TU256881 other upstream 1316931 3620798 ~ 3697529 (+) True G226399
TU256803 other upstream 1739549 3272374 ~ 3274911 (+) True G226347
TU256741 other upstream 1967677 3036602 ~ 3046783 (+) True G226292
TU256466 other upstream 2418993 2593227 ~ 2595467 (+) True CI01000053_02594164_02594541
TU259017 other downstream 360884 5375553 ~ 5378449 (+) True G228257
TU259080 other downstream 494575 5509244 ~ 5513074 (+) False CI01000053_05471449_05512831
TU259751 other downstream 1708530 6723199 ~ 6766877 (+) True G228900

Expression Profile