Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU259017 |
| length | 2877 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G228257 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 5375553 ~ 5378449 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU259034 | lncRNA | upstream | 114183 | 5261031 ~ 5261370 (+) | True | G228274 |
| TU259023 | lncRNA | upstream | 176985 | 5198356 ~ 5198568 (+) | True | G228263 |
| TU258999 | lncRNA | upstream | 218772 | 5156422 ~ 5156781 (+) | True | G228243 |
| TU258714 | lncRNA | upstream | 249146 | 5125961 ~ 5126407 (+) | True | G227979 |
| TU258709 | lncRNA | upstream | 260750 | 5114577 ~ 5114803 (+) | True | G227974 |
| TU259072 | lncRNA | downstream | 33510 | 5411959 ~ 5412340 (+) | True | G228311 |
| TU259070 | lncRNA | downstream | 34120 | 5412569 ~ 5413283 (+) | True | G228309 |
| TU259078 | lncRNA | downstream | 51908 | 5430357 ~ 5430563 (+) | True | G228317 |
| TU259084 | lncRNA | downstream | 66025 | 5444474 ~ 5445162 (+) | False | CI01000053_05435608_05443587 |
| TU259085 | lncRNA | downstream | 66025 | 5444474 ~ 5444722 (+) | True | CI01000053_05435608_05443587 |
| CI01000053_05362044_05364177.mRNA | mRNA | upstream | 9856 | 5360922 ~ 5365697 (+) | True | CI01000053_05362044_05364177 |
| CI01000053_05338500_05348218.mRNA | mRNA | upstream | 27335 | 5338500 ~ 5348218 (+) | True | CI01000053_05338500_05348218 |
| CI01000053_05332254_05334016.mRNA | mRNA | upstream | 41233 | 5332254 ~ 5334320 (+) | True | CI01000053_05332254_05334016 |
| CI01000053_05320241_05329853.mRNA | mRNA | upstream | 45689 | 5320241 ~ 5329864 (+) | True | CI01000053_05320241_05329853 |
| CI01000053_05314523_05315601.mRNA | mRNA | upstream | 58963 | 5314523 ~ 5316590 (+) | True | CI01000053_05314523_05315601 |
| CI01000053_05435608_05443587.mRNA | mRNA | downstream | 57030 | 5435479 ~ 5445226 (+) | False | CI01000053_05435608_05443587 |
| CI01000053_05471449_05512831.mRNA | mRNA | downstream | 93000 | 5471449 ~ 5513056 (+) | False | CI01000053_05471449_05512831 |
| CI01000053_05526931_05550454.mRNA | mRNA | downstream | 148180 | 5526629 ~ 5550472 (+) | True | CI01000053_05526931_05550454 |
| CI01000053_05563771_05573792.mRNA | mRNA | downstream | 185322 | 5563771 ~ 5573965 (+) | True | CI01000053_05563771_05573792 |
| CI01000053_05589379_05590208.mRNA | mRNA | downstream | 210443 | 5588892 ~ 5591102 (+) | True | CI01000053_05589379_05590208 |
| TU257989 | other | upstream | 959960 | 4414951 ~ 4415593 (+) | True | G227317 |
| TU256881 | other | upstream | 1678024 | 3620798 ~ 3697529 (+) | True | G226399 |
| TU256803 | other | upstream | 2100642 | 3272374 ~ 3274911 (+) | True | G226347 |
| TU256741 | other | upstream | 2328770 | 3036602 ~ 3046783 (+) | True | G226292 |
| TU256466 | other | upstream | 2780086 | 2593227 ~ 2595467 (+) | True | CI01000053_02594164_02594541 |
| TU259080 | other | downstream | 130795 | 5509244 ~ 5513074 (+) | False | CI01000053_05471449_05512831 |
| TU259751 | other | downstream | 1344750 | 6723199 ~ 6766877 (+) | True | G228900 |
