RNA id: TU259411


Basic Information

Item Value
RNA id TU259411
length 303
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G228589
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5602811 ~ 5603113 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTCAACAACGCTGTTGGACATTGTTGATATTTGAAATCAACCCAAACAAACCCACCCCTCTCTTCATTGCTCCGCCTCCAAAACTCACCCTTCAATCCTAACCACCCTGCTCCAAGTCGGTCTCGAACCGGGACCCAATAGACCCTTTTCACATTTCCTGGGTTTCTCAGAAGCGGAAGTCGTCATAGTTGGGTAAACTTTTATAGTGGTGAATGAGAGACTTCATTAAATATATTTTTCGTGTTTCCATTTGAGCAAATAGCAAAAGAAAAAGTTTTTGTTTTTGCTTTAGTCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259365 lncRNA downstream 50382 5551220 ~ 5552140 (-) True G228547
TU259408 lncRNA downstream 56432 5546145 ~ 5546379 (-) True G228586
TU259407 lncRNA downstream 60155 5542425 ~ 5542656 (-) True G228585
TU259406 lncRNA downstream 64987 5537605 ~ 5537824 (-) True G228584
TU259405 lncRNA downstream 69289 5533210 ~ 5533522 (-) True G228583
TU259414 lncRNA upstream 1636 5604749 ~ 5605034 (-) True G228592
TU259415 lncRNA upstream 2038 5605151 ~ 5605392 (-) True G228593
TU259417 lncRNA upstream 6184 5609297 ~ 5609705 (-) True G228595
TU259430 lncRNA upstream 40492 5643605 ~ 5643862 (-) True G228608
TU259432 lncRNA upstream 45920 5649033 ~ 5649250 (-) True G228610
CI01000053_05577140_05583728.mRNA mRNA downstream 18046 5577046 ~ 5584765 (-) True CI01000053_05577140_05583728
CI01000053_05552919_05561938.mRNA mRNA downstream 39850 5552235 ~ 5562961 (-) False CI01000053_05552919_05561938
CI01000053_05521820_05524159.mRNA mRNA downstream 78652 5521615 ~ 5524159 (-) True CI01000053_05521820_05524159
CI01000053_05452721_05459354.mRNA mRNA downstream 143457 5452264 ~ 5459354 (-) True CI01000053_05452721_05459354
CI01000053_05416830_05423957.mRNA mRNA downstream 178114 5415744 ~ 5424697 (-) True CI01000053_05416830_05423957
CI01000053_05621226_05622308.mRNA mRNA upstream 17296 5620409 ~ 5622498 (-) True CI01000053_05621226_05622308
CI01000053_05675892_05686424.mRNA mRNA upstream 71866 5674979 ~ 5686424 (-) True CI01000053_05675892_05686424
CI01000053_05690377_05690558.mRNA mRNA upstream 87264 5690377 ~ 5690777 (-) True CI01000053_05690377_05690558
CI01000053_05692640_05695728.mRNA mRNA upstream 89522 5692635 ~ 5695728 (-) True CI01000053_05692640_05695728
CI01000053_05732296_05750809.mRNA mRNA upstream 128265 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
TU258305 other downstream 1515071 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2049840 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 2050833 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 2050833 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2605543 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 181370 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 328479 5931592 ~ 5932241 (-) True G228750

Expression Profile