RNA id: TU259415


Basic Information

Item Value
RNA id TU259415
length 242
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G228593
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5605151 ~ 5605392 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCACGCACGCAGCAGGTTCACCACTGGGGGGCGTGACTTTGGCAGTTTAATACATGCTCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCATTTTTTTTTTTTTTTTTTTTGGCACACAAAAAGTATTCTCGTCGCTTCATAACATTAAGGTTGAACCACTGTACTCACATGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259414 lncRNA downstream 117 5604749 ~ 5605034 (-) True G228592
TU259411 lncRNA downstream 2038 5602811 ~ 5603113 (-) True G228589
TU259365 lncRNA downstream 52722 5551220 ~ 5552140 (-) True G228547
TU259408 lncRNA downstream 58772 5546145 ~ 5546379 (-) True G228586
TU259407 lncRNA downstream 62495 5542425 ~ 5542656 (-) True G228585
TU259417 lncRNA upstream 3905 5609297 ~ 5609705 (-) True G228595
TU259430 lncRNA upstream 38213 5643605 ~ 5643862 (-) True G228608
TU259432 lncRNA upstream 43641 5649033 ~ 5649250 (-) True G228610
TU259441 lncRNA upstream 57562 5662954 ~ 5663162 (-) True G228619
TU259442 lncRNA upstream 58107 5663499 ~ 5663732 (-) True G228620
CI01000053_05577140_05583728.mRNA mRNA downstream 20386 5577046 ~ 5584765 (-) True CI01000053_05577140_05583728
CI01000053_05552919_05561938.mRNA mRNA downstream 42190 5552235 ~ 5562961 (-) False CI01000053_05552919_05561938
CI01000053_05521820_05524159.mRNA mRNA downstream 80992 5521615 ~ 5524159 (-) True CI01000053_05521820_05524159
CI01000053_05452721_05459354.mRNA mRNA downstream 145797 5452264 ~ 5459354 (-) True CI01000053_05452721_05459354
CI01000053_05416830_05423957.mRNA mRNA downstream 180454 5415744 ~ 5424697 (-) True CI01000053_05416830_05423957
CI01000053_05621226_05622308.mRNA mRNA upstream 15017 5620409 ~ 5622498 (-) True CI01000053_05621226_05622308
CI01000053_05675892_05686424.mRNA mRNA upstream 69587 5674979 ~ 5686424 (-) True CI01000053_05675892_05686424
CI01000053_05690377_05690558.mRNA mRNA upstream 84985 5690377 ~ 5690777 (-) True CI01000053_05690377_05690558
CI01000053_05692640_05695728.mRNA mRNA upstream 87243 5692635 ~ 5695728 (-) True CI01000053_05692640_05695728
CI01000053_05732296_05750809.mRNA mRNA upstream 125986 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
TU258305 other downstream 1517411 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2052180 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 2053173 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 2053173 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2607883 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 179091 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 326200 5931592 ~ 5932241 (-) True G228750

Expression Profile