RNA id: TU259430


Basic Information

Item Value
RNA id TU259430
length 258
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G228608
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5643605 ~ 5643862 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGAAACCTATCATGAAGGTCGTAGTGCAGTCAAAACACATGCTAACTGTGCCTGTATGAGCAAATGGGATCATAAAAGAAGAAGCTTGTACACTTTTAAAAAGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACTCTCATGTTGTTCCACACCTGTAAGACCTTTGTTCATCTTTGGAACACAAATTAAGATATTTTTGATGAAATCTGAGAGGTATGTGACTCATCCATAGACAGCAATATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259417 lncRNA downstream 33900 5609297 ~ 5609705 (-) True G228595
TU259415 lncRNA downstream 38213 5605151 ~ 5605392 (-) True G228593
TU259414 lncRNA downstream 38571 5604749 ~ 5605034 (-) True G228592
TU259411 lncRNA downstream 40492 5602811 ~ 5603113 (-) True G228589
TU259365 lncRNA downstream 91176 5551220 ~ 5552140 (-) True G228547
TU259432 lncRNA upstream 5171 5649033 ~ 5649250 (-) True G228610
TU259441 lncRNA upstream 19092 5662954 ~ 5663162 (-) True G228619
TU259442 lncRNA upstream 19637 5663499 ~ 5663732 (-) True G228620
TU259444 lncRNA upstream 22541 5666403 ~ 5666761 (-) True G228622
TU259461 lncRNA upstream 113392 5757254 ~ 5757596 (-) True G228639
CI01000053_05621226_05622308.mRNA mRNA downstream 21107 5620409 ~ 5622498 (-) True CI01000053_05621226_05622308
CI01000053_05577140_05583728.mRNA mRNA downstream 58840 5577046 ~ 5584765 (-) True CI01000053_05577140_05583728
CI01000053_05552919_05561938.mRNA mRNA downstream 80644 5552235 ~ 5562961 (-) False CI01000053_05552919_05561938
CI01000053_05521820_05524159.mRNA mRNA downstream 119446 5521615 ~ 5524159 (-) True CI01000053_05521820_05524159
CI01000053_05452721_05459354.mRNA mRNA downstream 184251 5452264 ~ 5459354 (-) True CI01000053_05452721_05459354
CI01000053_05675892_05686424.mRNA mRNA upstream 31117 5674979 ~ 5686424 (-) True CI01000053_05675892_05686424
CI01000053_05690377_05690558.mRNA mRNA upstream 46515 5690377 ~ 5690777 (-) True CI01000053_05690377_05690558
CI01000053_05692640_05695728.mRNA mRNA upstream 48773 5692635 ~ 5695728 (-) True CI01000053_05692640_05695728
CI01000053_05732296_05750809.mRNA mRNA upstream 87516 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
CI01000053_06038638_06043939.mRNA mRNA upstream 394474 6038336 ~ 6043939 (-) True CI01000053_06038638_06043939
TU258305 other downstream 1555865 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2090634 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 2091627 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 2091627 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2646337 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 140621 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 287730 5931592 ~ 5932241 (-) True G228750

Expression Profile