RNA id: TU259441


Basic Information

Item Value
RNA id TU259441
length 209
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G228619
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5662954 ~ 5663162 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAACCAGCAGATCTCCGAGGCTAACTCCGCCGAATCCGCTCCGCTGGGAGGTCCTGAGGGGCTTCTCTACGTTCCCCCGGCACATCCTCAGCCCCTCATGGACTTAGCTCACTCCTCTCCAGGCTCTGGACACCCAGGTAGTTCACGTACCCTCTCGCTTCTGCAGCAACAGTACTGGTGGCCATCCATGCCCCAGGATGTCTCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259432 lncRNA downstream 13704 5649033 ~ 5649250 (-) True G228610
TU259430 lncRNA downstream 19092 5643605 ~ 5643862 (-) True G228608
TU259417 lncRNA downstream 53249 5609297 ~ 5609705 (-) True G228595
TU259415 lncRNA downstream 57562 5605151 ~ 5605392 (-) True G228593
TU259414 lncRNA downstream 57920 5604749 ~ 5605034 (-) True G228592
TU259442 lncRNA upstream 337 5663499 ~ 5663732 (-) True G228620
TU259444 lncRNA upstream 3241 5666403 ~ 5666761 (-) True G228622
TU259461 lncRNA upstream 94092 5757254 ~ 5757596 (-) True G228639
TU259463 lncRNA upstream 99137 5762299 ~ 5762553 (-) True G228641
TU259475 lncRNA upstream 121321 5784483 ~ 5787690 (-) False G228651
CI01000053_05621226_05622308.mRNA mRNA downstream 40456 5620409 ~ 5622498 (-) True CI01000053_05621226_05622308
CI01000053_05577140_05583728.mRNA mRNA downstream 78189 5577046 ~ 5584765 (-) True CI01000053_05577140_05583728
CI01000053_05552919_05561938.mRNA mRNA downstream 99993 5552235 ~ 5562961 (-) False CI01000053_05552919_05561938
CI01000053_05521820_05524159.mRNA mRNA downstream 138795 5521615 ~ 5524159 (-) True CI01000053_05521820_05524159
CI01000053_05452721_05459354.mRNA mRNA downstream 203600 5452264 ~ 5459354 (-) True CI01000053_05452721_05459354
CI01000053_05675892_05686424.mRNA mRNA upstream 11817 5674979 ~ 5686424 (-) True CI01000053_05675892_05686424
CI01000053_05690377_05690558.mRNA mRNA upstream 27215 5690377 ~ 5690777 (-) True CI01000053_05690377_05690558
CI01000053_05692640_05695728.mRNA mRNA upstream 29473 5692635 ~ 5695728 (-) True CI01000053_05692640_05695728
CI01000053_05732296_05750809.mRNA mRNA upstream 68216 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
CI01000053_06038638_06043939.mRNA mRNA upstream 375174 6038336 ~ 6043939 (-) True CI01000053_06038638_06043939
TU258305 other downstream 1575214 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2109983 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 2110976 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 2110976 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2665686 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 121321 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 268430 5931592 ~ 5932241 (-) True G228750

Expression Profile