RNA id: TU259551


Basic Information

Item Value
RNA id TU259551
length 236
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G228718
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5883618 ~ 5883878 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCCAGTTAGCTAAATTCTAACAAACACCAACAAACTTCTATGTTCATAGACAAACAGTTGTTCATGCTATAAATTAAACAATACCTTTACAAAAATGCTACTACTCAGTCATGTATTCAGCTACAGTAAAGCTTTAATCAGGATAAAACCATATATTGAAAGCTAACATAAACAGCAGTAACATTTACAAGTGACAGCATATCTAAACACTTTGACACAAGTACAAAAGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259533 lncRNA downstream 43516 5839847 ~ 5840102 (-) True G228700
TU259524 lncRNA downstream 59815 5823486 ~ 5823803 (-) True G228691
TU259522 lncRNA downstream 60804 5822495 ~ 5822814 (-) True G228689
TU259501 lncRNA downstream 80368 5802990 ~ 5803250 (-) True G228668
TU259498 lncRNA downstream 83775 5799069 ~ 5799843 (-) True G228666
TU259573 lncRNA upstream 35472 5919350 ~ 5919774 (-) True G228740
TU260057 lncRNA upstream 130060 6013938 ~ 6015808 (-) True G229167
TU260097 lncRNA upstream 244558 6128436 ~ 6128750 (-) True G229198
TU260105 lncRNA upstream 250065 6133943 ~ 6138966 (-) True G229203
TU260117 lncRNA upstream 268912 6152790 ~ 6153763 (-) True G229212
CI01000053_05732296_05750809.mRNA mRNA downstream 132809 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
CI01000053_05692640_05695728.mRNA mRNA downstream 187890 5692635 ~ 5695728 (-) True CI01000053_05692640_05695728
CI01000053_05690377_05690558.mRNA mRNA downstream 192841 5690377 ~ 5690777 (-) True CI01000053_05690377_05690558
CI01000053_05675892_05686424.mRNA mRNA downstream 197194 5674979 ~ 5686424 (-) True CI01000053_05675892_05686424
CI01000053_05621226_05622308.mRNA mRNA downstream 261120 5620409 ~ 5622498 (-) True CI01000053_05621226_05622308
CI01000053_06038638_06043939.mRNA mRNA upstream 154458 6038336 ~ 6043939 (-) True CI01000053_06038638_06043939
CI01000053_06060129_06071679.mRNA mRNA upstream 175731 6059609 ~ 6071679 (-) True CI01000053_06060129_06071679
CI01000053_06162569_06179766.mRNA mRNA upstream 278201 6162079 ~ 6180102 (-) True CI01000053_06162569_06179766
CI01000053_06287804_06296687.mRNA mRNA upstream 403336 6287214 ~ 6296687 (-) True CI01000053_06287804_06296687
CI01000053_06308157_06310323.mRNA mRNA upstream 423724 6307602 ~ 6310466 (-) False CI01000053_06308157_06310323
TU259481 other downstream 95928 5784483 ~ 5787690 (-) True G228651
TU258305 other downstream 1795878 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2330647 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 2331640 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU259584 other upstream 47714 5931592 ~ 5932241 (-) True G228750

Expression Profile