Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU260109 |
| length | 1269 |
| lncRNA type | antisense_over |
| GC content | 0.41 |
| exon number | 4 |
| gene id | G229207 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 6192641 ~ 6221224 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU260117 | lncRNA | downstream | 38878 | 6152790 ~ 6153763 (-) | True | G229212 |
| TU260105 | lncRNA | downstream | 53675 | 6133943 ~ 6138966 (-) | True | G229203 |
| TU260097 | lncRNA | downstream | 63891 | 6128436 ~ 6128750 (-) | True | G229198 |
| TU260057 | lncRNA | downstream | 176833 | 6013938 ~ 6015808 (-) | True | G229167 |
| TU259573 | lncRNA | downstream | 272867 | 5919350 ~ 5919774 (-) | True | G228740 |
| TU260133 | lncRNA | upstream | 1436 | 6222660 ~ 6223229 (-) | True | G229227 |
| TU260145 | lncRNA | upstream | 11681 | 6232905 ~ 6233161 (-) | True | G229235 |
| TU260146 | lncRNA | upstream | 13290 | 6234514 ~ 6234794 (-) | True | G229236 |
| TU260189 | lncRNA | upstream | 86094 | 6309304 ~ 6309351 (-) | True | G229265 |
| TU260358 | lncRNA | upstream | 502000 | 6723224 ~ 6724500 (-) | True | G229423 |
| CI01000053_06162569_06179766.mRNA | mRNA | downstream | 12539 | 6162079 ~ 6180102 (-) | True | CI01000053_06162569_06179766 |
| CI01000053_06060129_06071679.mRNA | mRNA | downstream | 120962 | 6059609 ~ 6071679 (-) | True | CI01000053_06060129_06071679 |
| CI01000053_06038638_06043939.mRNA | mRNA | downstream | 148702 | 6038336 ~ 6043939 (-) | True | CI01000053_06038638_06043939 |
| CI01000053_05732296_05750809.mRNA | mRNA | downstream | 441832 | 5731378 ~ 5750809 (-) | True | CI01000053_05732296_05750809 |
| CI01000053_05692640_05695728.mRNA | mRNA | downstream | 496913 | 5692635 ~ 5695728 (-) | True | CI01000053_05692640_05695728 |
| CI01000053_06287804_06296687.mRNA | mRNA | upstream | 65990 | 6287214 ~ 6296687 (-) | True | CI01000053_06287804_06296687 |
| CI01000053_06308157_06310323.mRNA | mRNA | upstream | 86378 | 6307602 ~ 6310466 (-) | False | CI01000053_06308157_06310323 |
| CI01000053_06662264_06720098.mRNA | mRNA | upstream | 440362 | 6661586 ~ 6720662 (-) | True | CI01000053_06662264_06720098 |
| CI01000053_06768909_06775364.mRNA | mRNA | upstream | 546748 | 6767972 ~ 6776006 (-) | True | CI01000053_06768909_06775364 |
| CI01000053_06777287_06806952.mRNA | mRNA | upstream | 556018 | 6777242 ~ 6806952 (-) | True | CI01000053_06777287_06806952 |
| TU259584 | other | downstream | 260400 | 5931592 ~ 5932241 (-) | True | G228750 |
| TU259481 | other | downstream | 404951 | 5784483 ~ 5787690 (-) | True | G228651 |
| TU258305 | other | downstream | 2104901 | 4087237 ~ 4087740 (-) | True | G227604 |
| TU257616 | other | downstream | 2639670 | 3552883 ~ 3552971 (-) | True | G227041 |
