RNA id: TU260133


Basic Information

Item Value
RNA id TU260133
length 473
lncRNA type intronic
GC content 0.38
exon number 2
gene id G229227
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6222660 ~ 6223229 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGGAATTTGCATTAATCAGGGTCCTAGACTGAGTAGTTTACACCTTTTGGGGACAAAAGGCCATTTGCATGAAAGACCCTATGAAGGTGGACACACCCATTACAGAGAGCAAAATATCTCTAAAATCTTAAAACCTTTATTACCTTCTGGTTTACTTCTGTGGTAATGAGACCTTTGTACCAGTTGCACTGAGACATTTCAAATGATACCAAACATGTATAATGTTGTATGATAACTGTTTACATTAAACCATATAGATTTTGGGTGAATTTCAGGTCATCTCTGCATGTAAAAAGAAGAGATGGGGGAAGAGGGGGGTGAAGGAAAGGAAATGTAGATTAAGGCAATGCTGAGGTGATTGACTCGGTGTGATTGCGTTTCGGATGGGGATGCTAATTTTGCAAGAGCCTATCAATGAAAACTGAACACTGGATTTACAGAAATCATTTCACTTTTAAGAAGTGTTTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260109 lncRNA downstream 1436 6192641 ~ 6221224 (-) True G229207
TU260117 lncRNA downstream 68897 6152790 ~ 6153763 (-) True G229212
TU260105 lncRNA downstream 83694 6133943 ~ 6138966 (-) True G229203
TU260097 lncRNA downstream 93910 6128436 ~ 6128750 (-) True G229198
TU260057 lncRNA downstream 206852 6013938 ~ 6015808 (-) True G229167
TU260145 lncRNA upstream 9676 6232905 ~ 6233161 (-) True G229235
TU260146 lncRNA upstream 11285 6234514 ~ 6234794 (-) True G229236
TU260189 lncRNA upstream 84089 6309304 ~ 6309351 (-) True G229265
TU260358 lncRNA upstream 499995 6723224 ~ 6724500 (-) True G229423
TU260394 lncRNA upstream 542401 6765630 ~ 6766857 (-) True G229459
CI01000053_06162569_06179766.mRNA mRNA downstream 42558 6162079 ~ 6180102 (-) True CI01000053_06162569_06179766
CI01000053_06060129_06071679.mRNA mRNA downstream 150981 6059609 ~ 6071679 (-) True CI01000053_06060129_06071679
CI01000053_06038638_06043939.mRNA mRNA downstream 178721 6038336 ~ 6043939 (-) True CI01000053_06038638_06043939
CI01000053_05732296_05750809.mRNA mRNA downstream 471851 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
CI01000053_05692640_05695728.mRNA mRNA downstream 526932 5692635 ~ 5695728 (-) True CI01000053_05692640_05695728
CI01000053_06287804_06296687.mRNA mRNA upstream 63985 6287214 ~ 6296687 (-) True CI01000053_06287804_06296687
CI01000053_06308157_06310323.mRNA mRNA upstream 84373 6307602 ~ 6310466 (-) False CI01000053_06308157_06310323
CI01000053_06662264_06720098.mRNA mRNA upstream 438357 6661586 ~ 6720662 (-) True CI01000053_06662264_06720098
CI01000053_06768909_06775364.mRNA mRNA upstream 544743 6767972 ~ 6776006 (-) True CI01000053_06768909_06775364
CI01000053_06777287_06806952.mRNA mRNA upstream 554013 6777242 ~ 6806952 (-) True CI01000053_06777287_06806952
TU259584 other downstream 290419 5931592 ~ 5932241 (-) True G228750
TU259481 other downstream 434970 5784483 ~ 5787690 (-) True G228651
TU258305 other downstream 2134920 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2669689 3552883 ~ 3552971 (-) True G227041

Expression Profile