RNA id: CI01000054_00612177_00613764.mRNA



Basic Information


Item Value
RNA id CI01000054_00612177_00613764.mRNA
length 3395
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000054_00612177_00613764
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 610335 ~ 614879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATATGCTGCTAATAAAATATGTCTTGCACATATTTTGGAATATAGTAAGTAATAAAAAAATGCTGTAATGAAGAAATGTTATTTCAAACATGATTTGATCAGAAGCATAAGTCATAAGTCGCACGGGTATATTTGTAGCAATAGCCAACAATACATTGTATGGGTCAAAATGATAGATTTTTCTTTTATGCCAAAAATCATTTGGATATTAAGAAAGCATCATGTTCCATTAAGATATTTTGTAAATTTCCTACCATAAAAATATCAAAAATGTATTTTTGTGAGTGGATATGCATTGGACATTCATTTGGACAACTTTAAAGGTTATTTTCTCAGTATTTTGATTTTTTTTGCACCCTCAGATTCCAGATATTCAAATAGTTGTATCTTGAACAAATATTGTGCTATCATAACAAACCATACATCAATGGAAAGCTTATTTATTCAGCTTTCAGATGATTTAAAAAAAAAGACTGGTTTTATGGTCCACGGTCACATTTATTTTTCAGCATTTTTTATGCTTTTATTTATTTATACTTTGATATCTTTATTTAACAACATAAGTATAAAAAAAACATGGGATCAACTGGTTTTGTTAAAAAATAAATAAATAAAAATGTGCATGTTACATCATTTCGCCAGTAATGTTGTGCTCACTGAGTGAATTTGTCATTGAATCAGCTAATTCTCTCAGAAAAGAAGCAGTTGAATTCTTTATGAGTGAGTCATTGAATCATTCAAACACTGATTCATTCAGGGACAAACAACATTACTGTGTGTTGCTTGGAGACACCGAGGTTGTTTGACTCCGTTTGGAAATATTTTTGTGGGCAGACCATAAACAGACAAAGTAACTGGAAATGCTGTCTCTGTAATGTAAGTTACCCAATATTAACGTATTGTTTGTTAAACTGCTGTATGGAAACTGTCACACTCGCGCTGTGAACAGAAAAACTGTCTACAAACAGTCGTTATTTTTACAATTCTGTGTGGTGACGGAAGTCGGGCAGAGATTACACACTTTACCTATAAGTTTAACCAAAAGAACCTTATACAGTGTTTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGAGGGAGGGAAAGTGAGAGAGAGACAGAGACCGAAAGATAACAGTAATGATATGGCTCCGCTCCAGCCTGTGAAGGCCATTAAAGTGTGATTCATGTGGCCATGTCCTTTAATGACATCTCCAGTTAGTCATCAATAAAGTGAGACAGATGTAGGATGAAGATGGAGCATTTTGATGGGTGGAGGGTTGGGGTTAGAATGACCTCTGTCCTCTGTTGAAGCTCCACGCTGATTCACGACACACTGCACGCGTGCACACACACACACAACAATGTTTTTTACTTGTCAACATTTTCAGTATGTGTGCACCGCCCCTCAAAAGTGTCCAGGGAGCGTGCTGGCCGTATCTGGCCCGGCGTGCACTCCATGAGTAATGGTGGACTAAGTGTTAAGGTGCTTGTACTCTGTTAAATGTCCCCAGTGCCATGCCTCAAAATGTCAAAGTATTAGATCAGTGACCTTGGTAGTATATTATGAGCTTTCAGAAAGTTTTATACTTCAGAAGATAAAATATTGACTATCCAAACATCCACTTTTACGGCCTAAACAGACAGATCATTTAAACTCATTTTGACAGTGCTATCTATCCCTGTTCATCTACAAAACGTGAGTTTTGCAGCCCCTTTAGACAGATGCCACGTTCTTATAAATGTTTTTTGTTGAGACGCTCCGTAACAAATGTAAAGAGCTTTCCTTCATGTTTTTACAGGCTATCCGGAATGAATGTCCCATCTCCTATTGTTAGCAACAAGAACTGGCTGAGGTTACACTTTGTTACTGACAGCAACCATCGATACAAAGGCTTCAGTGCCCATTATCAAGGTACTCGCTGCATCGCCAGGGCAAGTGACGGGGTTCAAAAAGCAACATCTGCACTGCGCTTCAGGACACAGCCCGGCAAAATCCAATTTAGGCCACTGATTCATCTGAAAGAGATGCCATCAGAATGGAAGCCCATTCCATTTCGGCCCTCTCCACTCTTATTCACATTAACCAGCTGTTGCTGGTTCAAGATGCCAGTTGATGGCAACGCTCATCTGCAGAAAATAAAGCTGCTATTGGCAGGGCTGTTTGGCTTCAATATACACAGACTTCCCAGGTCTCCATCTGAGAAACTCGACGACCAGTCTAGGAGCTTGTTGCCAGTGAACCAGTAAAAAAAGGATGGATGACGTGTTTAATTATAGTTTTAATGTGACTCCCTACAGCTATCCACCTTATTTTGAAGGTATTTTCTGTGAATGACTTCTGATTCATTAGCTGCTATAGGTAAATGACTAGAAGATTAATATCAAAGTGCAGTAAACTGTAAAACCATTTGCGCTACAAATCAGTGTTTATAATTACTACAATACATTAAAATAATATAATAAGAAAAATACCAGTTTGCAGCATAACGAGCTGTTTTGTACATCTAAAAATAACTGGAAGCGGTTGACACCAGAATTTACAAATGGTGGATACTCCACAAATTATTGTAATAATTGTTTCTGTTATTGACGGGAAGGTTTTCTGAAACAAGATTCATTCATTTAGCATACTTTTTAATTTTTTTATCTAAAGGGACATAGAAATGAGAATAGTGCATATAGTTTTAAGAGAACAGTACAATGATAAAGTAAATGTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTATGTAATTAATTACTCACCCTCATGTTGGTCCACACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCGAGAGGTATATGACTCGTCCATAGACAGCAATATAACCACCATTTTCAAGGTCCAGAAAGGTACTAAAGACATTGTTAAAACAGTCAACATGACTGCAGTGGTTCAACCTTAATGTTATGAAGCAACGAGAATACTTCTCAACGAGAATACTTCTCTTCTCTTCCCTGTCATTATCCATACACAGGTGATATCGGCCGATAAAAGCGCTTATTTTCACTATCGGCCATCAACCAATTGTTGCGTGATTCATTTGAGTCATCTTTTCCTCTTTACTAAAAGTTACAGCACAAAAATGTGCATGAACATCAGAAGGTATGTTGAAAGATACAGTACAACTTACTGAAATGTATCATGTAATCGCTCAATTAATGTTTCATCCGTGGAAAGATGTCAATAAAACAGCTTGTGAACAATATTTCACTTAATGTTGCATTTACCTTAGGACATTTTATCAATGTTCACAGTTTGTTAGTTAGCTATAAAAAAAACACTAGAGAGAAGCTTATTGTATGTATGTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU260635 lncRNA upstream 238403 371630 ~ 371932 (+) True G229682
TU260622 lncRNA upstream 261448 302855 ~ 348887 (+) True G229670
TU260590 lncRNA upstream 423307 184874 ~ 187028 (+) True G229638
TU260589 lncRNA upstream 512313 97764 ~ 98022 (+) True G229637
TU260580 lncRNA upstream 521953 88152 ~ 88382 (+) True G229630
TU260679 lncRNA downstream 245721 860600 ~ 861220 (+) True G229717
TU260696 lncRNA downstream 301237 916116 ~ 916329 (+) True CI01000054_00916253_00919736
TU260698 lncRNA downstream 303110 917989 ~ 918274 (+) True G229736
TU260825 lncRNA downstream 355700 970579 ~ 976960 (+) True G229847
TU260828 lncRNA downstream 363824 978703 ~ 981912 (+) False G229848
CI01000054_00390853_00579795.mRNA mRNA upstream 30540 390853 ~ 579795 (+) True CI01000054_00390853_00579795
CI01000054_00248538_00251489.mRNA mRNA upstream 358221 247993 ~ 252114 (+) True CI01000054_00248538_00251489
CI01000054_00239444_00241646.mRNA mRNA upstream 368492 239444 ~ 241843 (+) True CI01000054_00239444_00241646
CI01000054_00157332_00178926.mRNA mRNA upstream 430190 157332 ~ 180145 (+) True CI01000054_00157332_00178926
CI01000054_00131576_00136719.mRNA mRNA upstream 473489 130829 ~ 136846 (+) True CI01000054_00131576_00136719
CI01000054_00637123_00665809.mRNA mRNA downstream 21994 636873 ~ 666129 (+) True CI01000054_00637123_00665809
CI01000054_00666830_00754317.mRNA mRNA downstream 51513 666392 ~ 754317 (+) True CI01000054_00666830_00754317
CI01000054_00869317_00877277.mRNA mRNA downstream 252247 867126 ~ 878129 (+) True CI01000054_00869317_00877277
CI01000054_00879731_00882536.mRNA mRNA downstream 264852 879731 ~ 882597 (+) True CI01000054_00879731_00882536
CI01000054_00885259_00886020.mRNA mRNA downstream 270380 885259 ~ 886020 (+) True CI01000054_00885259_00886020
TU260714 other downstream 611456 1227807 ~ 1227900 (+) True G229740
TU260738 other downstream 651471 1266350 ~ 1273750 (+) True G229760
TU260932 other downstream 782201 1397080 ~ 1407130 (+) False G229936
TU260728 other downstream 963556 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 1036081 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628

Expression Profile