RNA id: CI01000054_00979998_00989171.mRNA


Basic Information

Item Value
RNA id CI01000054_00979998_00989171.mRNA
length 2020
RNA type mRNA
GC content 0.52
exon number 12
gene id CI01000054_00979998_00989171
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 979998 ~ 989171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGGAGGAGCTATTGGAAGCAGTCGAGAAGTTGCAGTTGAGGCTCGCAGAGAATCAAGAGCCTCGCAAGGTAATAAACCTTTTCGCTGAGACGAAGCGAACGCTTTACTTCGACACTTTCGCACCGCGTATGACTGTGTTATACGCGCTTCTGCTCGTGGCTAGTCAGAGGATCGTGCAGTATTGCTATCCAGAAATCCCACGTATAACAATTACCACAGCAGCAGACCGTGAAATGGATGATCGGCCACGACGACACTTGAAAGTGCACTTAAATGTCTGTTTTGGTGATTCTGGTGTAAAACTTCTGAAAACTCTCAAAAGGTTGGGGGAGCTGCCTATAACAGTAGACATCCTGGTGGAAACTGGCATTGGAAAGACTGTGAATTCTCTGCGCAAACATGAATTTGCTGGGGAGGCAGCGAAGAACCTTGTGGCCAAGTGGAAAAAGCTGGTGCCAGAGAGATCTGCAGACAGACCAACTGTAAAGGAGGGGCGTTCCCACTCACGCATTAATGAGTCTGGAGGGCACAAACGAGTCCGGGAACGGTCTCCAGAGGAGCCTCCGCTCATGGAGGAGGAACAACACGACGAGATGGAATACCAACCTGGCTACTCGCCCTCCCCTCCACAGCACTACAGCTCACCGTACAGACACGACAGTGCAAGGGGGTATCAGTCAGATGAGTATGAAAGCCCTCCAGAAGAGGAGCCGGAGCTGGAGCTGGAGCCAGAGCTGGAGCCGGAGCTGGAGCCCGAGCCCAGTCCCCCACGAAATGACATTAGACACAACAAGCCACACAAAGAGCCAGTCAGAGAGCACAATTCCCAAGACATACGGGAACAGGAGAGACGGAAGCACCGTCCCACGGGTGGCGGCAGCAGCAAGGAGAGGACGCACAGAGCTGAAAGAGAGCAACAGGGAAAATCAAGGGAGAGGGCGGAAGTTCCAGAGAAAATGGATGAGGATGAGGAGCCATTTGAAGCTCCAACCATGTCTTTCGAATCCTTTCTCACATATGACGCTCCGACCCCAAGCAAAAAGAAGAAAAAGCAGCCCTCGCGACCCCCTCAGCCTCCTGCCTCGATTCCTTCGGCTTCCTCTAAGTCTGGCAAGGCCAACGGGACCAGTAGTAAACGCTCAAAGTCATCCTCTTCCTCGGTGACCACGCCTGCTGTTCAAGAGAAACGCAGGAAGGTAGTGGATGTGGTTCCCACTCTTCCTGATATCCCTTTGCCAGCCATCCAGCCCAACTACAGACCACTGCCCTCCATTGATCTTACACCACTGTCCCCCCAGAGACGCAAAATCCCAGTGTCATACGACGAAGAGGATGCTGGCTGCGCAGGTCGACGGCTGAACTCCAAAATGGTGGTGTACTCTGGGTCCAAGACTGCGTATTTGCCGAAAATGATGTCTCTGTATGATCAGTGCATTAGAGTCCTGCAGAACAATATAGATTCAATTGATGAAGTGGGCGGAGTGCCATTTGAGATTCTGGAGCCAGTTCTGGAGAGATGCACGCCTGAGCAGCTTTACCGGATTGAGCAGTGTAATCAGTATTTCACAGAGGAGTCAGATGATCTGTGGATGAGACACTGCCGGCGGGATTTTAAACGTGATACCCCTCAAGAATATGAATCCTGGAGGGAGATGTATCTCCGGCTCCATGAAGAACGGGAAGAACGTCTGCGCAAGCTCACGATGAACATCAGTTCTGCCCATGCAAACAAACCTAAAGGGCGGCAGGTTAAAATGGCATATGTCAACTCTGCCGCTAAGCCGCCACGAAATATCCTCCGTCTACAAGAGAAGTTTGGCACTAAAAATGGTTCTACCAGCACAAGCGCTGCTCCTCCATCTGCCAGGATCAGACCAGCAACAAACTACAGCGCCCACAGCAGATCCACTGAGGTTGGTCAGTCTTCTTTCAGCAGCCCCCCTGAGTCCTCCTCACGCTCCTCTGCTCCCAGCACAGCTGGTGGACACAGTGCCAGAGAAAAACCACAAGTCAAAA

Function

GO: NA

KEGG:

id description
K15076 ELOA, TCEB3; elongin-A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261373 lncRNA downstream 64641 915135 ~ 915357 (-) True G230328
TU261161 lncRNA downstream 91839 885254 ~ 888159 (-) False G230145
TU261160 lncRNA downstream 91839 885802 ~ 888159 (-) True G230145
TU261165 lncRNA downstream 93773 863958 ~ 886225 (-) True G230148
TU261278 lncRNA upstream 4221 993392 ~ 996451 (-) True G230238
TU261380 lncRNA upstream 16095 1005266 ~ 1005502 (-) True G230335
TU261382 lncRNA upstream 26552 1015723 ~ 1019141 (-) True G230336
TU261387 lncRNA upstream 31503 1020674 ~ 1020880 (-) True G230341
TU261388 lncRNA upstream 40450 1029621 ~ 1029829 (-) True G230342
CI01000054_00974025_00979306.mRNA mRNA downstream 692 973900 ~ 979306 (-) True CI01000054_00974025_00979306
CI01000054_00965111_00970121.mRNA mRNA downstream 9877 964642 ~ 970121 (-) True CI01000054_00965111_00970121
CI01000054_00929337_00955240.mRNA mRNA downstream 24324 929132 ~ 955674 (-) True CI01000054_00929337_00955240
CI01000054_00924015_00926256.mRNA mRNA downstream 53742 923734 ~ 926256 (-) True CI01000054_00924015_00926256
CI01000054_00898039_00902381.mRNA mRNA downstream 77617 897542 ~ 902381 (-) True CI01000054_00898039_00902381
CI01000054_01115294_01116274.mRNA mRNA upstream 125522 1114693 ~ 1116822 (-) True CI01000054_01115294_01116274
CI01000054_01151083_01156699.mRNA mRNA upstream 161553 1150724 ~ 1158172 (-) True CI01000054_01151083_01156699
CI01000054_01203148_01209012.mRNA mRNA upstream 213734 1202905 ~ 1209135 (-) True CI01000054_01203148_01209012
CI01000054_01246516_01250511.mRNA mRNA upstream 255710 1244881 ~ 1251249 (-) True CI01000054_01246516_01250511
CI01000054_01257527_01259314.mRNA mRNA upstream 268356 1257527 ~ 1259314 (-) True CI01000054_01257527_01259314
TU261218 other upstream 196362 1185533 ~ 1230135 (-) False G230178
TU261209 other upstream 237252 1226423 ~ 1230135 (-) False G230178
TU261213 other upstream 237252 1226423 ~ 1230135 (-) False G230178
TU262094 other upstream 1848066 2837237 ~ 2837682 (-) True G230923
TU262064 other upstream 1864970 2854141 ~ 2859545 (-) False G230906

Expression Profile