RNA id: CI01000054_01725792_01726688.mRNA


Basic Information

Item Value
RNA id CI01000054_01725792_01726688.mRNA
length 502
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000054_01725792_01726688
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1725627 ~ 1726793 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAATAGAGAAAGTTTCCAAGCAACCCAGTGAAGCAATAGCAAGCGGCAGCAAGAGCCAGAGAAAACTTTCAACGCTGCTTTCGCTGATACAGAAAGTATTAAAGAAGATTTTTATATTTTAAATCCTCCTTTTTAACTTACTGACCAACGCATTCAGCACCATGGACAGCGTCCGCGCGGCGGTCTACCTGAGCGTTTTCCTCTCGCTGCTGTGCGTCTGCAGGGGTCAGATGTCACTGGACAACCGACTGACCACGCAAGAGGAGCAGTTCATCAAACGAGACCTGGCTGAGGCGCTCGATGAATTTTTGGATGGAGATCAGGACAATCGGATATCTGTGGAGAAAAAAGCTAGCGTCATTCCAAGGGCTCTGTGCTTAGAAGCTCGTGACAGCAACCTCGTCTATTCAAGTTTAATTCTTGACATGACATGGGAGATGTATTGATACTGTTGTATTGTTCGTATTGACTATGTTTAAACGTGTTTATTTTCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260739 lncRNA upstream 76673 1648295 ~ 1648954 (+) True CI01000054_01639395_01647833
TU260967 lncRNA upstream 121022 1604324 ~ 1604605 (+) True G229967
TU260786 lncRNA upstream 136597 1588056 ~ 1588342 (+) True G229808
TU260793 lncRNA upstream 139613 1585337 ~ 1586014 (+) True G229815
TU260956 lncRNA upstream 207069 1516335 ~ 1518558 (+) True G229958
TU261513 lncRNA downstream 9102 1735842 ~ 1739334 (+) True G230449
TU261535 lncRNA downstream 40683 1767423 ~ 1807305 (+) False G230462
TU261532 lncRNA downstream 74972 1801712 ~ 1807305 (+) False G230462
TU261533 lncRNA downstream 74972 1801712 ~ 1807305 (+) True G230462
TU261540 lncRNA downstream 131448 1858188 ~ 1971861 (+) False G230463
CI01000054_01706858_01711137.mRNA mRNA upstream 14377 1705732 ~ 1711250 (+) True CI01000054_01706858_01711137
CI01000054_01650242_01665628.mRNA mRNA upstream 59512 1650242 ~ 1666115 (+) False CI01000054_01650242_01665628
CI01000054_01639395_01647833.mRNA mRNA upstream 76747 1639395 ~ 1648880 (+) False CI01000054_01639395_01647833
CI01000054_01634335_01637623.mRNA mRNA upstream 87705 1634335 ~ 1637922 (+) True CI01000054_01634335_01637623
CI01000054_01613638_01617674.mRNA mRNA upstream 107270 1613318 ~ 1618357 (+) True CI01000054_01613638_01617674
CI01000054_01871659_01875753.mRNA mRNA downstream 144808 1871548 ~ 1876210 (+) True CI01000054_01871659_01875753
CI01000054_01879983_01965668.mRNA mRNA downstream 153243 1879983 ~ 1966159 (+) True CI01000054_01879983_01965668
CI01000054_02024879_02026284.mRNA mRNA downstream 298139 2024879 ~ 2027579 (+) False CI01000054_02024879_02026284
CI01000054_02096054_02105211.mRNA mRNA downstream 369314 2096054 ~ 2105265 (+) True CI01000054_02096054_02105211
CI01000054_02195667_02196307.mRNA mRNA downstream 468927 2195667 ~ 2196853 (+) True CI01000054_02195667_02196307
TU260765 other upstream 64062 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 143558 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 318497 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 451877 1266350 ~ 1273750 (+) True G229760
TU260714 other upstream 495298 1227807 ~ 1227900 (+) True G229740
TU261855 other downstream 563091 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 1351762 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 2181711 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 2680412 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3896275 5623015 ~ 5623101 (+) True G232485

Expression Profile