RNA id: TCONS_00016662



Basic Information


Item Value
RNA id TCONS_00016662
length 1319
RNA type mRNA
GC content 0.34
exon number 1
gene id XLOC_008287
representative True

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5343186 ~ 5344504 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TgtaggaaaaaaaagaagaagtatgATAACACATATTAATAAGTGTGGATGGATTTAATATCCCATCTGGTTTACTCCATGCATGTGTGAATTTTGTACTTGTCAAAATCAGACGCTTGCACTTCTGAAATGAATTTTCattactgttaaaatttcatcTCAATATACCAATGCAAGGAACTTCAGAATTAAGGTAAATTGCATGATTGTATATGTAGTTCTTGTACTATGATTGACacgttgtttttaaatgttcaaaataagTGAATAGATTCTTATAAAATGACTAGACTAAACTGTGTATTGGTGTTAAATATATAGGAagcaatcatatatatataattgttgcTCTCAATTTCTTTGAACAGAACACTGCATGTGCATACAGAGTTTTCATCATGAGGGATCCTCCTGTACAAAATACATCATTCACAGACTTTAAATTAAATGGTTTCTACAGCCTAGGAGATTTGAGGCCTTTTTTATTCATCCCTTTCTTTCTCATGTTTTCGTTGGCAATCACAGCAAATTCCCttctcatttatttaatcataagcCAGAGATCACTGCATTCTCCAATGTACATACTAATAGGTTTAATGGGCGTTGTAGATTTGCTCTTGCCAGTCTTTTTTGTTCCTAACATGCTTCTTAACTTTTTATTCAACTGGAGTGGGATATCTCTAACTGCTTGTTTGATACAAATGTTTTGCCTTCATTTTGTTGGAACATTTCAAACCACTTTGCTTTTATGTATGGCACTGGACCGCTACTTTGCAATATGCAAACCTCTTTATTATCATAAATACAAGGAGATCTCAAACTTTCTAAAGTTTGTGTTTGCACCTGTAATCAGAAATGCTTTACTAATTGTAATCATTGTCTCTCTGGCAGGAAGACTGTCATTTTGTGCAACAAATGTGATCGATCACTGTTTCTGTGAACACATGgcactggttcagttggcatgTGGAGATATATCCATTAACAACATTGTAGGATTACTGACTGTGTTCTTTGTACCCGCTACAGATTTTATTCTCATCACTGCTTCCTATGTCGTGATTTTTACTTCTGTATTCAAATCTGGCGAGACTCGCATGAAAGCCTTACACACCTGTATTACTCATTTAATTGTCCTGTCAGTTGCTCTTACTTCTGCCATGATTGCATTCTTGTCTTACAGAATAAGAAATGACATTTCATCCAACAATCGCATAGTTATCAGTGTCATGTATTTATGCTTCCCaagttgttttaacccaataaTCTATGGATGGAGGACAAAAGAAATACGGCAGATGTTTCTTAAGTTATAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170086

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00018883 lncRNA upstream 64283 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018755 lncRNA upstream 86404 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018882 lncRNA upstream 788758 4553896 ~ 4554428 (+) True XLOC_008271
TCONS_00018754 lncRNA upstream 811221 4528549 ~ 4531965 (+) True XLOC_008270
TCONS_00018881 lncRNA upstream 1023257 4317326 ~ 4319929 (+) True XLOC_008269
TCONS_00018884 lncRNA downstream 123594 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00018885 lncRNA downstream 123856 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018886 lncRNA downstream 497053 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00018887 lncRNA downstream 814505 6159009 ~ 6160503 (+) True XLOC_008297
TCONS_00018756 lncRNA downstream 1441145 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00016661 mRNA upstream 1807 5339056 ~ 5341379 (+) True XLOC_008286
TCONS_00016660 mRNA upstream 8930 5332900 ~ 5334256 (+) True XLOC_008285
TCONS_00016659 mRNA upstream 19640 5321612 ~ 5323546 (+) True XLOC_008284
TCONS_00016658 mRNA upstream 42371 5299404 ~ 5300815 (+) True XLOC_008283
TCONS_00016657 mRNA upstream 48163 5293785 ~ 5295023 (+) True XLOC_008282
TCONS_00016663 mRNA downstream 15903 5360407 ~ 5364508 (+) True XLOC_008288
TCONS_00016664 mRNA downstream 283859 5628363 ~ 5630452 (+) True XLOC_008290
TCONS_00016666 mRNA downstream 557466 5901970 ~ 5916820 (+) True XLOC_008293
TCONS_00016667 mRNA downstream 579347 5923851 ~ 5943845 (+) False XLOC_008294
TCONS_00016668 mRNA downstream 579347 5923851 ~ 5946785 (+) False XLOC_008294
TCONS_00016634 other upstream 1836763 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 2657480 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 2668596 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 2984561 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 3469408 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 510607 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 1214546 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 1334017 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 1426082 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 3338318 8682822 ~ 8682937 (+) True XLOC_008317