RNA id: TCONS_00018885


Basic Information

Item Value
RNA id TCONS_00018885
length 833
lncRNA type inter_gene
GC content 0.27
exon number 3
gene id XLOC_008289
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5468098 ~ 5471508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAAAACAATCCACATTTAGAAAGGTCACGTTTACTGCAGTaacatcattaaaaaatattcttttttacatttatttagatcAGTTGCTCCAAGTATAATGCCAAAAGCATCTGTTTTAGTTATTCTAAGTGAACCAAAATGTCTAATAGAAGTTTATTCTTGTCAACAGATCACTTCTGTCTGGTTTAATCAGTTTTGAAAATCAGTTTTATTCACTAATTCCATTTCAAGTTGGCAATAAAATAtaagtattaatatttatatatttactttgtAAGTTACAAGACGTGATAATAGAATAGAATGTctttaattaatatgttaaccttcaaaataaaaattttatttctaaataaatttacccaaaacaaatgaattaaaaatggaatgaaaatgttttatgtttttatggaTGTATTTGTATTATGTCTTTTGACAAATCGTGGCATGAAGTTTGCTCACTTTTttccttaattcattcgttttacccagtggatgcctttccacctgcaaccctgtactgggaaacacccattctgacatttcttcagattttttaaaaagaatttagAAAGGGTGAATGCAAATGCTGTGACACCATTGTAAAATATGATGGGATGCaaagcttatttttatttaaatttttttttagaatttactcattagtagaaaaaaaaaggtttggtgCAAAAATTGTtcagaaaaataagttaaattaattatacacagttaaagtcagaattattagcacttttttttcccaatttctgtttaacggagagatttattcaacaaatttctaaacataatagactTTCTCCTTAtaaacat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018883 lncRNA upstream 189457 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018755 lncRNA upstream 211578 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018882 lncRNA upstream 913932 4553896 ~ 4554428 (+) True XLOC_008271
TCONS_00018754 lncRNA upstream 936395 4528549 ~ 4531965 (+) True XLOC_008270
TCONS_00018881 lncRNA upstream 1148431 4317326 ~ 4319929 (+) True XLOC_008269
TCONS_00018886 lncRNA downstream 370049 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00018887 lncRNA downstream 687501 6159009 ~ 6160503 (+) True XLOC_008297
TCONS_00018756 lncRNA downstream 1314141 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00018888 lncRNA downstream 1395768 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018757 lncRNA downstream 1668902 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00016663 mRNA upstream 103852 5360407 ~ 5364508 (+) True XLOC_008288
TCONS_00016662 mRNA upstream 123856 5343186 ~ 5344504 (+) True XLOC_008287
TCONS_00016661 mRNA upstream 126981 5339056 ~ 5341379 (+) True XLOC_008286
TCONS_00016660 mRNA upstream 134104 5332900 ~ 5334256 (+) True XLOC_008285
TCONS_00016659 mRNA upstream 144814 5321612 ~ 5323546 (+) True XLOC_008284
TCONS_00016664 mRNA downstream 156855 5628363 ~ 5630452 (+) True XLOC_008290
TCONS_00016666 mRNA downstream 430462 5901970 ~ 5916820 (+) True XLOC_008293
TCONS_00016667 mRNA downstream 452343 5923851 ~ 5943845 (+) False XLOC_008294
TCONS_00016668 mRNA downstream 452343 5923851 ~ 5946785 (+) False XLOC_008294
TCONS_00016669 mRNA downstream 452484 5923992 ~ 5958803 (+) True XLOC_008294
TCONS_00016634 other upstream 1961937 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 2782654 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 2793770 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 3109735 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 3594582 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 383603 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 1087542 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 1207013 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 1299078 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 3211314 8682822 ~ 8682937 (+) True XLOC_008317