RNA id: CI01000054_02951289_02967370.mRNA



Basic Information


Item Value
RNA id CI01000054_02951289_02967370.mRNA
length 1036
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000054_02951289_02967370
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2950915 ~ 2967660 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAAAAGAGATACAGTCAGAACATCACAGGACAGCACAGACAGCAGCAAAACACAATCCACAAAGAAGAAACCCAGACTACAAGCAAGGTAAATGTTCTTATTCTCATTGTCAATCAATCTATTATTATCATTTATAATTTTAAAAATTATCAAAGCATTTTTTCAATAATTAATATAGTAACATATTATTTCAAATAATATTTTCATGTCACATTTTCAGATGGTTCCAGTGTTGATGTTACTCATGGCAGCTCTTGTAGCTGCAGATGAGCCAATGATGGAACTCTCAGATGCAGTAGAGTCAGTAGATAGTGCCTCTGTCTCTGTGGTTCACTGTGATGCTGCTACTGTGTGTCCTGATGGAACAACATGCTGTCTGAGTCCTTATGGAGTGTGGTACTGCTGTCCATTCTCAATGGGTCAGTGCTGCAGAGATGGAGTTCATTGCTGCCGTCATGGTTATCACTGCGATTCGACATCGACCCATTGTTTGAGGGGGTGGATGAGATTGTCATCTTCTCCTCTGCCAGCCTCCAAAGCTATCCAGAAAACTCAGCTCTTGTAGCTGCAGATGTGCCGACGATGGATCTCACAGACCCAGTTGAGTCAGTAGATAATGCCCCTAGGGTGGTCTGCAGTAATGGTGGTACGTGTCCTATTGGAAACACATGCTGTCGGACTCTTACTGGCTGGGGATGCTGTCCGCACATATTGGTAAAACACAGTAAAATGTGTAACTGATTTATACTTCGTTAAGTTTAAGGTTTAACCCTTATTTTTTCTGTTCACTCCTTCAGGCTGTGTGCTGCGCAGATAGAATTAGGTGCTGTCCCCAGGGTTATCGCTGCAGTGGGGTCCTATGTGTGAAGGGGTGGTTGAGAGCGCCATCTTCTTCTAAATAGGGTTGGTGTTGTAAGGAAGCAACTCCCATGTCCTTGGTGAACCTCTTATCAAAGTCTGTCAAAGTGAAAGAGGCTTTCAAACTCATTAGGGAATAGATTAATCCAACATTCAAACTGTATTCATGTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU261841 lncRNA upstream 37339 2910956 ~ 2913576 (+) True G230695
TU261839 lncRNA upstream 84275 2864597 ~ 2866640 (+) True G230693
TU261991 lncRNA upstream 98933 2850455 ~ 2851982 (+) True G230839
TU261990 lncRNA upstream 100831 2849814 ~ 2850084 (+) True G230838
TU261848 lncRNA upstream 107767 2838097 ~ 2843148 (+) True G230702
TU261843 lncRNA downstream 21349 2989009 ~ 3000019 (+) True G230697
TU261846 lncRNA downstream 33535 3001195 ~ 3003117 (+) True G230700
TU262008 lncRNA downstream 89204 3056864 ~ 3057219 (+) True G230856
TU262190 lncRNA downstream 171733 3139393 ~ 3139663 (+) True G231015
TU262394 lncRNA downstream 391611 3359271 ~ 3359533 (+) True G231209
CI01000054_02824071_02824355.mRNA mRNA upstream 126273 2824025 ~ 2824642 (+) True CI01000054_02824071_02824355
CI01000054_02652696_02685815.mRNA mRNA upstream 265082 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
CI01000054_02613166_02614884.mRNA mRNA upstream 335457 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_02589793_02592201.mRNA mRNA upstream 357989 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02564258_02570248.mRNA mRNA upstream 380510 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02975008_02985278.mRNA mRNA downstream 6928 2974588 ~ 2985335 (+) True CI01000054_02975008_02985278
CI01000054_03016199_03016501.mRNA mRNA downstream 48299 3015959 ~ 3016693 (+) True CI01000054_03016199_03016501
CI01000054_03424472_03425704.mRNA mRNA downstream 455394 3423054 ~ 3426433 (+) True CI01000054_03424472_03425704
CI01000054_03558982_03663042.mRNA mRNA downstream 591322 3558982 ~ 3663042 (+) True CI01000054_03558982_03663042
CI01000054_03670684_03671857.mRNA mRNA downstream 703024 3670684 ~ 3672003 (+) True CI01000054_03670684_03671857
TU261855 other upstream 646533 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 1224122 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 1289350 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 1368846 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1543785 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 110842 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 940791 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1439492 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 2655355 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3026000 5993660 ~ 6041863 (+) True G232558

Expression Profile