RNA id: CI01000054_03016199_03016501.mRNA



Basic Information


Item Value
RNA id CI01000054_03016199_03016501.mRNA
length 735
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000054_03016199_03016501
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3015959 ~ 3016693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCATAAAAAGCAGTCCATATTGCTCATGCATATTGGTTCAACGTCAAGACCAATGACAACATTTGACGTTACGTGTATTTTTTTGGGTGAGAAATTCCCTTTAAATAGCTAAGAAGAGATAACAAGAATTCATAAATGACAAATAAATGGAAGATGACAAATGAGTCGATATGAAAATAAGACAACAGCATAACAAGCATCAATATTTTAGAATAGCGACCAAGAAAATAATATACATCAATGGGAGATGTTTGTTGCCCAGGCACAGCGGTTGAATTCAGATATCGTCGAGTTGGTCCTGTGAGATCGTCCGGAGAAAAATGCTCACTGCACACCCTCAATGCGCGGATAGATTCGACGGGTGAGTTAATATCCCGTTTGAGAGCGAGCAGCCACAGCTTCAGTCTCTCTGGATCGTGCAGCGGCAATGTGTGGAAAGTCAAACTTTCCTCCTGTGATGATGCCGTTGGACGGAGTCTTATTGCTTTCTCTCGGTTAAAACATCCAGGAAAAGCACACACGCGTACCATCGCGGGTTTTTAGTAACATAGCCTATGTTTCGTTTAGACCTATTCCTTTTACAGGCTATAATTTAGTCTGTTCTTCTCCGTTCACAGAAGTACAGCAGGTGCGATGTGACCATGAACAGGCTACCATGGTATTTTTAATAGGTCACAGACACATCCCTTCAGATTTAATTTAATAAGCCTACCATTTGCATAATATTGTGTGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU261846 lncRNA upstream 12842 3001195 ~ 3003117 (+) True G230700
TU261843 lncRNA upstream 15940 2989009 ~ 3000019 (+) True G230697
TU261851 lncRNA upstream 51950 2933908 ~ 2964009 (+) True G230705
TU261841 lncRNA upstream 102383 2910956 ~ 2913576 (+) True G230695
TU261839 lncRNA upstream 149319 2864597 ~ 2866640 (+) True G230693
TU262008 lncRNA downstream 40171 3056864 ~ 3057219 (+) True G230856
TU262190 lncRNA downstream 122700 3139393 ~ 3139663 (+) True G231015
TU262394 lncRNA downstream 342578 3359271 ~ 3359533 (+) True G231209
TU262455 lncRNA downstream 388524 3405217 ~ 3405519 (+) True G231270
TU262458 lncRNA downstream 393906 3410599 ~ 3410925 (+) True G231273
CI01000054_02975008_02985278.mRNA mRNA upstream 30624 2974588 ~ 2985335 (+) True CI01000054_02975008_02985278
CI01000054_02951289_02967370.mRNA mRNA upstream 48299 2950915 ~ 2967660 (+) True CI01000054_02951289_02967370
CI01000054_02824071_02824355.mRNA mRNA upstream 191317 2824025 ~ 2824642 (+) True CI01000054_02824071_02824355
CI01000054_02652696_02685815.mRNA mRNA upstream 330126 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
CI01000054_02613166_02614884.mRNA mRNA upstream 400501 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_03424472_03425704.mRNA mRNA downstream 406361 3423054 ~ 3426433 (+) True CI01000054_03424472_03425704
CI01000054_03558982_03663042.mRNA mRNA downstream 542289 3558982 ~ 3663042 (+) True CI01000054_03558982_03663042
CI01000054_03670684_03671857.mRNA mRNA downstream 653991 3670684 ~ 3672003 (+) True CI01000054_03670684_03671857
CI01000054_03707961_03761024.mRNA mRNA downstream 691142 3707835 ~ 3761112 (+) True CI01000054_03707961_03761024
CI01000054_03848427_03914231.mRNA mRNA downstream 831734 3848427 ~ 3914231 (+) False CI01000054_03848427_03914231
TU261855 other upstream 711577 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 1289166 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 1354394 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 1433890 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1608829 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 61809 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 891758 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1390459 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 2606322 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 2976967 5993660 ~ 6041863 (+) True G232558

Expression Profile