RNA id: CI01000054_04248925_04249335.mRNA



Basic Information


Item Value
RNA id CI01000054_04248925_04249335.mRNA
length 1229
RNA type mRNA
GC content 0.42
exon number 1
gene id CI01000054_04248925_04249335
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4248359 ~ 4249587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAAATCAGTTGATTTAGTAAGCTCAAGCTGTCTGGAGTATTTAATACACAATTTACAACGTTAGACGCGGTTAAAAGTCTCTATATTTACAAAAATAAGGGCATAAAAGTTATTTTTATAACCCTGAAAGCATAGTTATAAAGTGTAAATCATCGCTGTCATTCTGAAGTACCACAATTTCTTTTCATCACATTCTCACTTAGACACATAAGCACATTCTAGCCTATGTAAACGAGTGACACAGGTAAAAAAAAAAAAGAGAGACTCTTACCAGGTAGACCGCCGGAGTGAGGAGAAAGACGGCACACCAACACGTCGCCCGCATCCTCCCTTATCTCAAACTTCCACTAATTTCCCTGCGCTGTTTCTTTTGTATGTAAGGAACATAGATCCACTTGGTATCCGCTTTAGACCTTTAGCCTAGGCAAAAATGACATTATAGACCCCATGACCACAGAATAGGCTTTAAACTTGGACACAGATAAGGGAGGGAGAGCAAATGAACGGTTACATAGGCATTAATCCAGTCAAGGAGTGAAGCACAGTCATATTTCATTAAGATGTCATGGGAGATGGTCGCTGGTCTTGCTGCCTGGAGTGACTGCGGCGTAAGTCCTCTTAGAAACAAGGACAGAGGCTTTTCACGCGCGCGCTGTCACTCAGCGGTGGCTTTATATCGCGCGCTGAGAGCCACGCGCGCCGTACTACATCCGGAGAGAAGCTCAGAGGGGGTGGGACGAGAGGAGAGTGGGGGAAAAAAAAGATTAAAGAACCGAACGAGATTGGTCCAAGAGACGACGGGATCACACGATTGCGACGACTTAAAAGAGAATCACAGCCCACCGGAGAAGCTTTTTTGCGTGATTTCATGCGCGCAAGACGACGTGTTCGAGGAGCGCGCCACAACTCTTCACGGATATATTGTGCGTTGTTGCCATAAGAAACTGAACGCATCTAAACCTGTGAGTTAAATTTGACTCACTTTGACAGACATTAAAATTCAGGTATTCCTAATTACGGTATAAAGTGTATTGTGTAAAAAAATGTATGTAAAATAACTACTTAAATTTTCCGGGTTCATTTCAATCACACACACACACACACACACACACACACACACACACACACACACATATTTTATATTATACACACACACACACACACGCACACACACACACACACACACACACATTCTTCGATTTCAATGAATGCATATGTCACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU263061 lncRNA upstream 16766 4224024 ~ 4231593 (+) True G231813
TU263059 lncRNA upstream 31207 4216880 ~ 4217152 (+) True G231811
TU262935 lncRNA upstream 156332 4091604 ~ 4092027 (+) True G231691
TU262570 lncRNA upstream 331967 3914849 ~ 3916392 (+) True G231353
TU262567 lncRNA upstream 415754 3832302 ~ 3832605 (+) True G231350
TU263082 lncRNA downstream 32929 4282516 ~ 4283147 (+) True G231832
TU263141 lncRNA downstream 143707 4393294 ~ 4393526 (+) True G231883
TU263142 lncRNA downstream 146434 4396021 ~ 4396286 (+) True G231884
TU263153 lncRNA downstream 225533 4475120 ~ 4475704 (+) True G231895
TU263283 lncRNA downstream 432845 4682432 ~ 4685153 (+) True G232014
CI01000054_03955331_03962388.mRNA mRNA upstream 285964 3955331 ~ 3962395 (+) True CI01000054_03955331_03962388
CI01000054_03848427_03914231.mRNA mRNA upstream 334128 3848427 ~ 3914231 (+) False CI01000054_03848427_03914231
CI01000054_03707961_03761024.mRNA mRNA upstream 487247 3707835 ~ 3761112 (+) True CI01000054_03707961_03761024
CI01000054_03670684_03671857.mRNA mRNA upstream 576356 3670684 ~ 3672003 (+) True CI01000054_03670684_03671857
CI01000054_03558982_03663042.mRNA mRNA upstream 585317 3558982 ~ 3663042 (+) True CI01000054_03558982_03663042
CI01000054_04372172_04374454.mRNA mRNA downstream 121838 4371425 ~ 4374901 (+) True CI01000054_04372172_04374454
CI01000054_04453321_04456780.mRNA mRNA downstream 203734 4453321 ~ 4457108 (+) True CI01000054_04453321_04456780
CI01000054_04658039_04659082.mRNA mRNA downstream 408404 4657991 ~ 4659701 (+) True CI01000054_04658039_04659082
CI01000054_04924205_04945546.mRNA mRNA downstream 674572 4924159 ~ 4945841 (+) True CI01000054_04924205_04945546
CI01000054_04962081_04977729.mRNA mRNA downstream 712343 4961930 ~ 4977937 (+) True CI01000054_04962081_04977729
TU262576 other upstream 334813 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU261835 other upstream 1160967 3078502 ~ 3087392 (+) True G230689
TU261855 other upstream 1943977 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 2521566 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 2586794 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU263121 other downstream 157565 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 1373428 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 1744073 5993660 ~ 6041863 (+) True G232558
TU263932 other downstream 2054720 6304307 ~ 6304441 (+) True G232608
TU264006 other downstream 2125263 6374850 ~ 6375894 (+) True G232659

Expression Profile