RNA id: CI01000054_05822181_05823458.mRNA


Basic Information

Item Value
RNA id CI01000054_05822181_05823458.mRNA
length 470
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000054_05822181_05823458
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5822146 ~ 5823684 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATACAAATGTGATTATATGTCGTTTTAGGCATTTAAAGGGATAATTCGCCCTAAAATGAAAATTCTTTAATCGTTTACTCGGCTACATGTTGTTTCAAACCTGTATGGCTTTCCTCCGTCTCATTCACTTTCTTTGTATGGAAGGAAAAGTGACTGATATGTCAGCATTATATCTGTCTACTTGAGCGAGTCATTATATATAATGTTTGTTTTCAGAGAAGGCCATGGCTCGTGGGCAACAGAAGATCCAGTCTCAACAGAAGAACGCAAAGAAAGCAGCTGAGAAGAAGAAATCTCAAGGAGCGGATCAGAAGACTGCCGCCAAAGCAGCACTGGTCCACACCTGTCCTGTCTGCAGGACGCAGATGCCAGATCCCAAGACGTTTAAACAGCATTTTGAAAGCAAACACCCAAAGTCTCCTATGCCTCCTGAGCTGGTGGATGTTCAAGCCTAAAGGACACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264838 lncRNA downstream 32058 5782960 ~ 5790110 (-) True G233392
TU264840 lncRNA downstream 38895 5760299 ~ 5783273 (-) False G233392
TU264872 lncRNA downstream 70890 5750346 ~ 5751278 (-) True G233420
TU264796 lncRNA downstream 347776 5474145 ~ 5474392 (-) True G233356
TU263750 lncRNA downstream 407626 5414224 ~ 5414542 (-) True G232439
TU264878 lncRNA upstream 456860 6280544 ~ 6286767 (-) True CI01000054_06283619_06286512
TU264992 lncRNA upstream 493637 6317321 ~ 6325541 (-) True G233539
TU265045 lncRNA upstream 589399 6413083 ~ 6413708 (-) True G233581
TU265049 lncRNA upstream 594921 6418605 ~ 6418858 (-) True G233585
TU265059 lncRNA upstream 599097 6422781 ~ 6423081 (-) True G233590
CI01000054_05711250_05711861.mRNA mRNA downstream 109529 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05685529_05686880.mRNA mRNA downstream 134754 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05341497_05372926.mRNA mRNA downstream 449242 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05292456_05317677.mRNA mRNA downstream 503177 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_04671351_04681181.mRNA mRNA downstream 1140807 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_05827691_05828736.mRNA mRNA upstream 3709 5827393 ~ 5830717 (-) True CI01000054_05827691_05828736
CI01000054_05853193_05858118.mRNA mRNA upstream 29391 5853075 ~ 5858118 (-) True CI01000054_05853193_05858118
CI01000054_05956278_05957354.mRNA mRNA upstream 132429 5956113 ~ 5957354 (-) True CI01000054_05956278_05957354
CI01000054_05990266_06191955.mRNA mRNA upstream 166582 5990266 ~ 6191955 (-) True CI01000054_05990266_06191955
CI01000054_06210877_06211356.mRNA mRNA upstream 387123 6210807 ~ 6211475 (-) True CI01000054_06210877_06211356
TU263564 other downstream 612928 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1149935 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1149935 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 1839345 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 2758825 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 804398 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 1341751 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 3424355 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 3659463 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 3659668 9485215 ~ 9485318 (-) False G235290

Expression Profile